Gm1818 Pseudogene Detail

Summary

• Symbol
  Gm1818
• Name
  predicted gene 1818
• Synonyms
  LOC217536

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3037676
  NCBI Gene: 217536
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:48602091-48606668 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 21.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3037676	pseudogene	Chr12:48601842-48606757 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0019716	protein coding gene	Chr12:47271392-47273286 (-)
A/J	MGP_AJ_G0016838	protein coding gene	Chr1:178413367-178432401 (-)
AKR/J	MGP_AKRJ_G0016804	protein coding gene	Chr1:183730366-183748430 (-)
BALB/cJ	MGP_BALBcJ_G0016796	protein coding gene	Chr1:179034998-179053172 (-)
C3H/HeJ	MGP_C3HHeJ_G0016621	protein coding gene	Chr1:184459758-184478992 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0014967	protein coding gene	Chr1:169405455-169425192 (-)
CAST/EiJ	MGP_CASTEiJ_G0016202	protein coding gene	Chr1:183767916-183785922 (-)
CBA/J	MGP_CBAJ_G0016595	protein coding gene	Chr1:199065643-199073607 (-)
DBA/2J	MGP_DBA2J_G0016701	protein coding gene	Chr1:177249464-177267638 (-)
FVB/NJ	MGP_FVBNJ_G0016697	protein coding gene	Chr1:175328478-175347542 (-)
LP/J	MGP_LPJ_G0016775	protein coding gene	Chr1:187171546-187191190 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016728	protein coding gene	Chr1:206216080-206236604 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017296	protein coding gene	Chr1:183448567-183468191 (-)
PWK/PhJ	MGP_PWKPhJ_G0015990	protein coding gene	Chr1:176331880-176350179 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0015766	protein coding gene	Chr1:182412179-182430229 (-)
WSB/EiJ	MGP_WSBEiJ_G0016265	protein coding gene	Chr1:183685221-183703338 (-)

Homology

• Gene Tree
  Gm1818
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  4

• Ensembl
  ENSMUSG00000091277 (Evidence)
• NCBI Gene
  217536

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091277	Ensembl Gene Model | MGI Sequence Detail	4578	C57BL/6J
transcript	ENSMUST00000169406	Ensembl | MGI Sequence Detail	1184	Not Applicable
polypeptide	XP_054875563	RefSeq | MGI Sequence Detail	396	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;