A430018G15Rik Gene Detail

Summary

• Symbol
  A430018G15Rik
• Name
  RIKEN cDNA A430018G15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3040796
  NCBI Gene: 115489452
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:52315024-52324902 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 29.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  242 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3040796	lncRNA gene	Chr2:52314989-52324907 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015418	unclassified non-coding RNA gene	Chr2:51758001-51767854 (+)
A/J	MGP_AJ_G0015393	unclassified non-coding RNA gene	Chr2:49758166-49768015 (+)
AKR/J	MGP_AKRJ_G0015357	unclassified non-coding RNA gene	Chr2:51192251-51202103 (+)
BALB/cJ	MGP_BALBcJ_G0015357	unclassified non-coding RNA gene	Chr2:49856865-49866722 (+)
C3H/HeJ	MGP_C3HHeJ_G0015181	unclassified non-coding RNA gene	Chr2:51188919-51198772 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015811	unclassified non-coding RNA gene	Chr2:53284196-53294062 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013551	unclassified non-coding RNA gene	Chr2:47740126-47750057 (+)
CAST/EiJ	MGP_CASTEiJ_G0014732	unclassified non-coding RNA gene	Chr2:51299803-51309674 (+)
CBA/J	MGP_CBAJ_G0015160	unclassified non-coding RNA gene	Chr2:55299385-55309248 (+)
DBA/2J	MGP_DBA2J_G0015255	unclassified non-coding RNA gene	Chr2:49410634-49420532 (+)
FVB/NJ	MGP_FVBNJ_G0015262	unclassified non-coding RNA gene	Chr2:49097072-49106955 (+)
LP/J	MGP_LPJ_G0015335	unclassified non-coding RNA gene	Chr2:51637832-51647697 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015288	unclassified non-coding RNA gene	Chr2:56319159-56328706 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015850	unclassified non-coding RNA gene	Chr2:51105518-51115377 (+)
PWK/PhJ	MGP_PWKPhJ_G0014520	unclassified non-coding RNA gene	Chr2:49288751-49298732 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014308	unclassified non-coding RNA gene	Chr2:51323199-51333062 (+)
WSB/EiJ	MGP_WSBEiJ_G0014839	unclassified non-coding RNA gene	Chr2:51394501-51404357 (+)

Homology

• Gene Tree
  A430018G15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving A430018G15Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000085315 (Evidence)
• NCBI Gene
  115489452

Representative Sequences			Length	Strain/Species
genomic	115489452	NCBI Gene Model | MGI Sequence Detail	9879	C57BL/6J
transcript	NR_165460	RefSeq | MGI Sequence Detail	3411	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for A430018G15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17726	Chr2:52315016-52315033 (+)	1 bp
Tssr17727	Chr2:52315253-52315258 (+)	232 bp