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Airim Gene Detail
Summary
  • Symbol
    Airim
  • Name
    AFG2 interacting ribosome maturation factor
  • Synonyms
    9930104L06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3041172
    NCBI Gene: 194268
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:124830841-124838449 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 57.94 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    352 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3041172
 protein coding gene Chr4:124830777-124838454 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015575
 unclassified non-coding RNA gene Chr4:126504063-126513818 (+)
A/J MGP_AJ_G0015552
 unclassified non-coding RNA gene Chr4:121536633-121544038 (+)
AKR/J MGP_AKRJ_G0015516
 unclassified non-coding RNA gene Chr4:124861232-124883174 (+)
BALB/cJ MGP_BALBcJ_G0015514
 unclassified non-coding RNA gene Chr4:122114016-122121917 (+)
C3H/HeJ MGP_C3HHeJ_G0015336
 unclassified non-coding RNA gene Chr4:124946970-124955609 (+)
C57BL/6NJ MGP_C57BL6NJ_G0015967
 unclassified non-coding RNA gene Chr4:131367961-131376858 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013702
 unclassified non-coding RNA gene Chr4:114707141-114714225 (+)
CAST/EiJ MGP_CASTEiJ_G0014891
 unclassified non-coding RNA gene Chr4:123017293-123024621 (+)
CBA/J MGP_CBAJ_G0015317
 unclassified non-coding RNA gene Chr4:134650354-134657771 (+)
DBA/2J MGP_DBA2J_G0015410
 unclassified non-coding RNA gene Chr4:122010013-122018159 (+)
FVB/NJ MGP_FVBNJ_G0015418
 unclassified non-coding RNA gene Chr4:120637950-120648642 (+)
LP/J MGP_LPJ_G0015491
 unclassified non-coding RNA gene Chr4:126796822-126804208 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015441
 unclassified non-coding RNA gene Chr4:139621794-139632600 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016009
 unclassified non-coding RNA gene Chr4:125225708-125233125 (+)
PWK/PhJ MGP_PWKPhJ_G0014676
 unclassified non-coding RNA gene Chr4:118435171-118445223 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014464
 unclassified non-coding RNA gene Chr4:120997645-121005069 (+)
WSB/EiJ MGP_WSBEiJ_G0014996
 unclassified non-coding RNA gene Chr4:125301152-125310777 (+)



Homology
more
  • Human Ortholog
    AIRIM, AFG2 interacting ribosome maturation factor
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    AIRIM, AFG2 interacting ribosome maturation factor
  • Synonyms
    C1orf109
  • Links
    NCBI Gene ID: 54955
    neXtProt AC: NX_Q9NX04
    UniProt: Q9NX04

  • Chr Location
    1p34.3; chr1:37681570-37692249 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    11
  • Chemically induced (other)
    2
  • Gene trapped
    7
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Airim
  • Find Mice (IMSR)
    8 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    14
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000044730 Ensembl Gene Model | MGI Sequence Detail 7609 C57BL/6J ±  kb
transcript ENSMUST00000094769 Ensembl | MGI Sequence Detail 2911 Not Applicable  
polypeptide ENSMUSP00000154851 Ensembl | MGI Sequence Detail 217 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 1
Other
Accession IDs
less
MGI:7450966
References
more
  • Summaries
    All 29
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory