9230114K14Rik Gene Detail

Summary

• Symbol
  9230114K14Rik
• Name
  RIKEN cDNA 9230114K14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041212
  NCBI Gene: 414108
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:52348023-52355326 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 27.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  311 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041212	lncRNA gene	Chr5:52347997-52436376 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015598	unclassified non-coding RNA gene	Chr5:51149366-51244629 (+)
A/J	MGP_AJ_G0015574	unclassified non-coding RNA gene	Chr5:49363246-49462667 (+)
AKR/J	MGP_AKRJ_G0015538	unclassified non-coding RNA gene	Chr5:51030454-51124227 (+)
BALB/cJ	MGP_BALBcJ_G0015536	unclassified non-coding RNA gene	Chr5:49829494-49920082 (+)
C3H/HeJ	MGP_C3HHeJ_G0015358	unclassified non-coding RNA gene	Chr5:51204483-51295052 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015990	unclassified non-coding RNA gene	Chr5:53289983-53383842 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013725	unclassified non-coding RNA gene	Chr5:46145039-46235386 (+)
CAST/EiJ	MGP_CASTEiJ_G0014914	unclassified non-coding RNA gene	Chr5:50197050-50295998 (+)
CBA/J	MGP_CBAJ_G0015339	unclassified non-coding RNA gene	Chr5:54918671-55020005 (+)
DBA/2J	MGP_DBA2J_G0015433	unclassified non-coding RNA gene	Chr5:49423585-49513806 (+)
FVB/NJ	MGP_FVBNJ_G0015440	unclassified non-coding RNA gene	Chr5:48767161-48856093 (+)
LP/J	MGP_LPJ_G0015514	unclassified non-coding RNA gene	Chr5:51613125-51712155 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015463	unclassified non-coding RNA gene	Chr5:56031276-56125166 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016032	unclassified non-coding RNA gene	Chr5:50531060-50622792 (+)
PWK/PhJ	MGP_PWKPhJ_G0014699	unclassified non-coding RNA gene	Chr5:48484928-48575338 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014487	unclassified non-coding RNA gene	Chr5:49968518-50068444 (+)
WSB/EiJ	MGP_WSBEiJ_G0015018	unclassified non-coding RNA gene	Chr5:50571246-50667187 (+)

Homology

• Gene Tree
  9230114K14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  2
• Gene trapped
  4
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving 9230114K14Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000097145 (Evidence)
• NCBI Gene
  414108

Representative Sequences			Length	Strain/Species
genomic	414108	NCBI Gene Model | MGI Sequence Detail	7304	C57BL/6J
transcript	NR_015537	RefSeq | MGI Sequence Detail	2118	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 1

References

• Summaries
  All 31

  Phenotypes 20
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for 9230114K14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46165	Chr5:52347202-52347213 (+)	-815 bp
Tssr46166	Chr5:52347992-52348046 (+)	-4 bp
Tssr46167	Chr5:52348061-52348070 (+)	43 bp