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BC028471 Gene Detail
Summary
  • Symbol
    BC028471
  • Name
    cDNA sequence BC028471
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3041249
    NCBI Gene: 105242581
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:149291101-149317061 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 89.18 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    913 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3041249
 lncRNA gene Chr5:149291032-149330769 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006877
 lincRNA gene Chr5:155179049-155206907 (+)
A/J MGP_AJ_G0006871
 lincRNA gene Chr5:148567286-148595374 (+)
AKR/J MGP_AKRJ_G0006841
 lincRNA gene Chr5:153148772-153176151 (+)
BALB/cJ MGP_BALBcJ_G0006847
 lincRNA gene Chr5:149813683-149839580 (+)
C3H/HeJ MGP_C3HHeJ_G0006792
 lincRNA gene Chr5:154143018-154171536 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007012
 lincRNA gene Chr5:160873266-160906341 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006263
 lincRNA gene Chr5:142915690-142942471 (+)
CAST/EiJ MGP_CASTEiJ_G0006711
 lincRNA gene Chr5:153762506-153790964 (+)
CBA/J MGP_CBAJ_G0006774
 lincRNA gene Chr5:167627630-167659222 (+)
DBA/2J MGP_DBA2J_G0006794
 lincRNA gene Chr5:148219039-148245966 (+)
FVB/NJ MGP_FVBNJ_G0006817
 lincRNA gene Chr5:147474626-147503128 (+)
LP/J MGP_LPJ_G0006877
 lincRNA gene Chr5:155874708-155903128 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006799
 lincRNA gene Chr5:169760338-169795496 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007014
 lincRNA gene Chr5:153084207-153113047 (+)
PWK/PhJ MGP_PWKPhJ_G0006652
 lincRNA gene Chr5:147379928-147406076 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006560
 lincRNA gene Chr5:150392518-150419497 (+)
WSB/EiJ MGP_WSBEiJ_G0006765
 lincRNA gene Chr5:153897920-153925187 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
  • All Sequences
    36
  • RefSeq
    7
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000107271 Ensembl Gene Model | MGI Sequence Detail 25961 C57BL/6J ±  kb
transcript ENSMUST00000202022 Ensembl | MGI Sequence Detail 4113 Not Applicable  
polypeptide Q3UU29 UniProt | EBI | MGI Sequence Detail 62 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6
References
more
  • Summaries
    All 9
  • Earliest
    J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
  • Latest
    J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory