Dcdc5 Gene Detail

Summary

• Symbol
  Dcdc5
• Name
  doublecortin domain containing 5
• Synonyms
  4732421G10Rik, EG436559

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3045363
  NCBI Gene: 329482
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr2:105868563-106234411 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 55.58 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  10105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045363	protein coding gene	Chr2:105833679-106236532 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039869	pseudogene	Chr2:108190678-108624230 (+)
A/J	MGP_AJ_G0039875	pseudogene	Chr2:103682111-104086485 (+)
AKR/J	MGP_AKRJ_G0039799	pseudogene	Chr2:106517397-106940582 (+)
BALB/cJ	MGP_BALBcJ_G0039852	pseudogene	Chr2:103954208-104367961 (+)
C3H/HeJ	MGP_C3HHeJ_G0039498	pseudogene	Chr2:106813682-107262517 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040418	pseudogene	Chr2:111700527-112142005 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037013	pseudogene	Chr2:99470213-99872306 (+)
CAST/EiJ	MGP_CASTEiJ_G0038604	pseudogene	Chr2:107334630-107758697 (+)
CBA/J	MGP_CBAJ_G0039466	pseudogene	Chr2:115593901-116057496 (+)
DBA/2J	MGP_DBA2J_G0039670	pseudogene	Chr2:103233926-103642549 (+)
FVB/NJ	MGP_FVBNJ_G0039628	pseudogene	Chr2:102197996-102592478 (+)
LP/J	MGP_LPJ_G0039708	pseudogene	Chr2:108353457-108794626 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039625	pseudogene	Chr2:119432791-119880242 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040518	pseudogene	Chr2:106698488-107128575 (+)
PWK/PhJ	MGP_PWKPhJ_G0038277	pseudogene	Chr2:102754911-103180444 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038021	pseudogene	Chr2:105941927-106371216 (+)
WSB/EiJ	MGP_WSBEiJ_G0038835	pseudogene	Chr2:107431704-107856658 (+)

Homology

• Gene Tree
  Dcdc5
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Dcdc5
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  26 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  773
• Tissues
  16
• cDNA Data
  7
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000074981 (Evidence)
• NCBI Gene
  329482

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074981	Ensembl Gene Model | MGI Sequence Detail	365849	C57BL/6J
transcript	ENSMUST00000122388	Ensembl | MGI Sequence Detail	5296	Not Applicable
polypeptide	A2BHQ5	UniProt | EBI | MGI Sequence Detail	186	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR043188 Doublecortin domain-containing protein 1
  IPR036572 Doublecortin domain superfamily

Molecular
Reagents

• All nucleic 9

  cDNA 7

  Other 2

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:3041252, MGI:3648853

References

• Summaries
  All 20

  Developmental Gene Expression 2

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Dcdc5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19274	Chr2:105911270-105911275 (+)	42,710 bp
Tssr19275	Chr2:105911338-105911349 (+)	42,781 bp
Tssr19276	Chr2:105911372-105911380 (+)	42,813 bp
Tssr19277	Chr2:106056794-106056803 (+)	188,236 bp
Tssr19278	Chr2:106135082-106135099 (+)	266,528 bp
Tssr19279	Chr2:106213055-106213056 (+)	344,493 bp