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Cdcp2 Gene Detail
Summary
  • Symbol
    Cdcp2
  • Name
    CUB domain containing protein 2
  • Synonyms
    D030010E02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3045328
    NCBI Gene: 242603
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:106954088-106970322 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 50.02 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    586 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3045328
 protein coding gene Chr4:106954088-106971420 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028531
 protein coding gene Chr4:107766638-107777660 (+)
A/J MGP_AJ_G0028494
 protein coding gene Chr4:103905041-103915905 (+)
AKR/J MGP_AKRJ_G0028441
 protein coding gene Chr4:106441418-106455861 (+)
BALB/cJ MGP_BALBcJ_G0028513
 protein coding gene Chr4:104095451-104106767 (+)
C3H/HeJ MGP_C3HHeJ_G0028227
 protein coding gene Chr4:107196239-107207122 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028953
 protein coding gene Chr4:111647517-111658381 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026244
 protein coding gene Chr4:99184955-99196336 (+)
CAST/EiJ MGP_CASTEiJ_G0027663
 protein coding gene Chr4:105010641-105021325 (+)
CBA/J MGP_CBAJ_G0028196
 protein coding gene Chr4:115261236-115272100 (+)
DBA/2J MGP_DBA2J_G0028344
 protein coding gene Chr4:103522175-103533027 (+)
FVB/NJ MGP_FVBNJ_G0028312
 protein coding gene Chr4:102390870-102401801 (+)
LP/J MGP_LPJ_G0028445
 protein coding gene Chr4:107963916-107974793 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028338
 protein coding gene Chr4:120562762-120573626 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028989
 protein coding gene Chr4:106683482-106694371 (+)
PWK/PhJ MGP_PWKPhJ_G0027389
 protein coding gene Chr4:101769551-101780360 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027213
 protein coding gene Chr4:104087116-104097941 (+)
WSB/EiJ MGP_WSBEiJ_G0027744
 protein coding gene Chr4:106867814-106879847 (+)



Homology
more
  • Human Ortholog
    CDCP2, CUB domain containing protein 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDCP2, CUB domain containing protein 2
  • Links
    NCBI Gene ID: 200008
    neXtProt AC: NX_Q5VXM1
    UniProt: Q5VXM1

  • Chr Location
    1p32.3; chr1:54132687-54153770 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000047636 Ensembl Gene Model | MGI Sequence Detail 16235 C57BL/6J ±  kb
    transcript ENSMUST00000221740 Ensembl | MGI Sequence Detail 1623 Not Applicable  
    polypeptide ENSMUSP00000152236 Ensembl | MGI Sequence Detail 540 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 2
      cDNA 2

      Microarray probesets 1
    References
    more
    • Summaries
      All 27
      Gene Ontology 1
      Phenotypes 13
    • Earliest
      J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory