C130073F10Rik Gene Detail

Summary

• Symbol
  C130073F10Rik
• Name
  RIKEN cDNA C130073F10 gene

• Feature Type
  protein coding gene
• IDs
  MGI:3045359
  NCBI Gene: 242574
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:101747217-101750986 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 46.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045359	protein coding gene	Chr4:101747217-101760875 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0028497	protein coding gene	Chr4:102228616-102233353 (-)
A/J	MGP_AJ_G0028459	protein coding gene	Chr4:98627326-98640368 (-)
AKR/J	MGP_AKRJ_G0028406	protein coding gene	Chr4:101020007-101024233 (-)
BALB/cJ	MGP_BALBcJ_G0028477	protein coding gene	Chr4:98859130-98862880 (-)
C3H/HeJ	MGP_C3HHeJ_G0028191	protein coding gene	Chr4:101813880-101818847 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0028917	protein coding gene	Chr4:106069437-106077312 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026209	protein coding gene	Chr4:93896621-93900179 (-)
CAST/EiJ	MGP_CASTEiJ_G0027630	protein coding gene	Chr4:99620493-99621473 (-)
CBA/J	MGP_CBAJ_G0028161	protein coding gene	Chr4:109423971-109427169 (-)
DBA/2J	MGP_DBA2J_G0028310	protein coding gene	Chr4:98330344-98335209 (-)
FVB/NJ	MGP_FVBNJ_G0028276	protein coding gene	Chr4:97173901-97179057 (-)
LP/J	MGP_LPJ_G0028410	protein coding gene	Chr4:102526569-102544316 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028304	protein coding gene	Chr4:114955927-114959622 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0028954	protein coding gene	Chr4:101284592-101288749 (-)
PWK/PhJ	MGP_PWKPhJ_G0027356	protein coding gene	Chr4:96510280-96514356 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0027178	protein coding gene	Chr4:98716673-98723495 (-)
WSB/EiJ	MGP_WSBEiJ_G0027709	protein coding gene	Chr4:101454999-101458724 (-)

Homology

• Gene Tree
  C130073F10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  5
• Genomic Mutations
  4 involving C130073F10Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  19 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  870
• Tissues
  45
• cDNA Data
  6
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS89784.1

• Ensembl
  ENSMUSG00000046133 (Evidence)
• NCBI Gene
  242574

Representative Sequences			Length	Strain/Species
genomic	242574	NCBI Gene Model | MGI Sequence Detail	3770	C57BL/6J
transcript	NM_001331179	RefSeq | MGI Sequence Detail	928	C57BL/6
polypeptide	NP_001318108	RefSeq | MGI Sequence Detail	201	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR050694 PRAME domain-containing protein

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 4

References

• Summaries
  All 26

  Developmental Gene Expression 2

  Phenotypes 9
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42