1600029O15Rik Pseudogene Detail

Summary

• Symbol
  1600029O15Rik
• Name
  RIKEN cDNA 1600029O15 gene

• Feature Type
  pseudogene
• IDs
  MGI:3045362
  NCBI Gene: 665268
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:58115321-58115837 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 31.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045362	pseudogene	Chr9:58110180-58116091 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039756	pseudogene	Chr9:57474982-57480887 (+)
A/J	MGP_AJ_G0039755	pseudogene	Chr9:55612465-55618394 (+)
AKR/J	MGP_AKRJ_G0039680	pseudogene	Chr9:56907672-56913572 (+)
BALB/cJ	MGP_BALBcJ_G0039724	pseudogene	Chr9:55383801-55389708 (+)
C3H/HeJ	MGP_C3HHeJ_G0039383	pseudogene	Chr9:57378302-57384247 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040285	pseudogene	Chr9:59065304-59071068 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036913	pseudogene	Chr9:54895952-54902344 (+)
CAST/EiJ	MGP_CASTEiJ_G0038504	pseudogene	Chr9:57471926-57477837 (+)
CBA/J	MGP_CBAJ_G0039356	pseudogene	Chr9:61147191-61153097 (+)
DBA/2J	MGP_DBA2J_G0039552	pseudogene	Chr9:55467547-55473459 (+)
FVB/NJ	MGP_FVBNJ_G0039509	pseudogene	Chr9:54702185-54708020 (+)
LP/J	MGP_LPJ_G0039591	pseudogene	Chr9:57764348-57770246 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039510	pseudogene	Chr9:62601309-62607138 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040391	pseudogene	Chr9:56918680-56924592 (+)
PWK/PhJ	MGP_PWKPhJ_G0038179	pseudogene	Chr9:55512053-55517970 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037925	pseudogene	Chr9:57204899-57210538 (+)
WSB/EiJ	MGP_WSBEiJ_G0038738	pseudogene	Chr9:56857362-56863277 (+)

Homology

• Gene Tree
  1600029O15Rik
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000057818 (Evidence)
• NCBI Gene
  665268

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000057818	Ensembl Gene Model | MGI Sequence Detail	517	C57BL/6J
transcript	ENSMUST00000178259	Ensembl | MGI Sequence Detail	517	Not Applicable
polypeptide	Q9DAS6	UniProt | EBI | MGI Sequence Detail	209	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR001063 Large ribosomal subunit protein uL22
  IPR018260 Large ribosomal subunit protein uL22, conserved site
  IPR005721 Large ribosomal subunit protein uL22, eukaryotic/archaeal
  IPR036394 Ribosomal protein uL22 superfamily

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 9
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;