Mrpl48-ps Pseudogene Detail

Summary

• Symbol
  Mrpl48-ps
• Name
  mitochondrial ribosomal protein L48 pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:3050089
  NCBI Gene: 269553
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:88517412-88518047 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 42.01 cM, cytoband C4

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3050089	pseudogene	Chr4:88517220-88518112 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012750	pseudogene	Chr4:88467815-88468450 (-)
A/J	MGP_AJ_G0012737	pseudogene	Chr4:85385363-85385998 (-)
AKR/J	MGP_AKRJ_G0012708	pseudogene	Chr4:87494323-87495436 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0012576	pseudogene	Chr4:88217022-88219309 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013048	pseudogene	Chr4:91857885-91858520 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009425	pseudogene	Chr10:52171075-52171674 (+)
CAST/EiJ	MGP_CASTEiJ_G0010231	pseudogene	Chr10:56641937-56642539 (+)
CBA/J	MGP_CBAJ_G0013765	pseudogene	Chr7:111054863-111062062 (-)
DBA/2J	MGP_DBA2J_G0012615	pseudogene	Chr4:85146480-85147115 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012687	pseudogene	Chr4:88828029-88829596 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013055	pseudogene	Chr4:87636432-87637067 (-)
PWK/PhJ	MGP_PWKPhJ_G0012153	pseudogene	Chr4:83463657-83464391 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009946	pseudogene	Chr10:55961496-55962115 (+)
WSB/EiJ	MGP_WSBEiJ_G0012356	pseudogene	Chr4:87836990-87837758 (-)

Homology

• Gene Tree
  Mrpl48-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Endonuclease-mediated
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  5 involving Mrpl48-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000078480 (Evidence)
• NCBI Gene
  269553

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078480	Ensembl Gene Model | MGI Sequence Detail	636	C57BL/6J
transcript	ENSMUST00000121413	Ensembl | MGI Sequence Detail	636	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48