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Smim40 Gene Detail
Summary
  • Symbol
    Smim40
  • Name
    small integral membrane protein 40
  • Synonyms
    BC033916, Platr17
  • Feature Type
    protein coding gene
  • IDs
    MGI:3054967
    NCBI Gene: 474160
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:34124109-34125649 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 17.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3054967
 protein coding gene Chr17:34112180-34125654 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005721
 lincRNA gene Chr17:33852006-33856087 (+)
A/J MGP_AJ_G0005710
 lincRNA gene Chr17:32687763-32689234 (+)
AKR/J MGP_AKRJ_G0005689
 lincRNA gene Chr17:33083734-33084882 (+)
BALB/cJ MGP_BALBcJ_G0005690
 lincRNA gene Chr17:32858902-32862175 (+)
C3H/HeJ MGP_C3HHeJ_G0005637
 lincRNA gene Chr17:33439207-33440318 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0005201
 lincRNA gene Chr17:30190286-30191453 (+)
CAST/EiJ MGP_CASTEiJ_G0005579
 lincRNA gene Chr17:33509582-33510729 (+)
CBA/J MGP_CBAJ_G0005625
 lincRNA gene Chr17:36535589-36538209 (+)
DBA/2J MGP_DBA2J_G0005643
 lincRNA gene Chr17:32061937-32064512 (+)
FVB/NJ MGP_FVBNJ_G0005669
 lincRNA gene Chr17:31924931-31926078 (+)
LP/J MGP_LPJ_G0005724
 lincRNA gene Chr17:34128487-34130456 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005654
 lincRNA gene Chr17:35585614-35590727 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005848
 lincRNA gene Chr17:33407656-33408807 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0005444
 lincRNA gene Chr17:31365140-31368156 (+)
WSB/EiJ MGP_WSBEiJ_G0005631
 lincRNA gene Chr17:33450015-33451019 (+)



Homology
more
  • Human Ortholog
    SMIM40, small integral membrane protein 40
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM40, small integral membrane protein 40
  • Links
    NCBI Gene ID: 113523636
    UniProt: Q5STR5

  • Chr Location
    6p21.32; chr6:33323628-33329279 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    729
  • Tissues
    18
  • cDNA Data
    3
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000092349 Ensembl Gene Model | MGI Sequence Detail 1541 C57BL/6J ±  kb
transcript ENSMUST00000172817 Ensembl | MGI Sequence Detail 807 Not Applicable  
polypeptide ENSMUSP00000154114 Ensembl | MGI Sequence Detail 81 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 4
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:6284520
References
more
  • Summaries
    All 18
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory