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Cbx6 Gene Detail
Summary
  • Symbol
    Cbx6
  • Name
    chromobox 6
  • Feature Type
    protein coding gene
  • IDs
    MGI:3512628
    NCBI Gene: 494448
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:79708099-79718534 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 37.85 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    284 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3512628
 protein coding gene Chr15:79708097-79718889 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022088
 protein coding gene Chr15:80123394-80133818 (-)
A/J MGP_AJ_G0022049
 protein coding gene Chr15:77350400-77360830 (-)
AKR/J MGP_AKRJ_G0022024
 protein coding gene Chr15:79508613-79519043 (-)
BALB/cJ MGP_BALBcJ_G0022055
 protein coding gene Chr15:77361306-77371732 (-)
C3H/HeJ MGP_C3HHeJ_G0021826
 protein coding gene Chr15:79498112-79508542 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022498
 protein coding gene Chr15:83273981-83284408 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020028
 protein coding gene Chr15:73832974-73843671 (-)
CAST/EiJ MGP_CASTEiJ_G0021347
 protein coding gene Chr15:80218070-80228812 (-)
CBA/J MGP_CBAJ_G0021791
 protein coding gene Chr15:85868486-85878916 (-)
DBA/2J MGP_DBA2J_G0021920
 protein coding gene Chr15:76835827-76846224 (-)
FVB/NJ MGP_FVBNJ_G0021898
 protein coding gene Chr15:75862458-75872878 (-)
LP/J MGP_LPJ_G0021988
 protein coding gene Chr15:80309877-80320302 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021918
 protein coding gene Chr15:90965446-90973633 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022512
 protein coding gene Chr15:79543217-79553984 (-)
PWK/PhJ MGP_PWKPhJ_G0021089
 protein coding gene Chr15:76848285-76859050 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020926
 protein coding gene Chr15:79336175-79347032 (-)
WSB/EiJ MGP_WSBEiJ_G0021399
 protein coding gene Chr15:79931867-79942635 (-)



Homology
more
  • Human Ortholog
    CBX6, chromobox 6
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CBX6, chromobox 6
  • Links
    NCBI Gene ID: 23466
    neXtProt AC: NX_O95503
    UniProt: O95503

  • Chr Location
    22q13.1; chr22:38861422-38872249 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    27 phenotypes from 1 allele in 1 genetic background
    31 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    4
  • cDNA Data
    16
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 494448 NCBI Gene Model | MGI Sequence Detail 10436 C57BL/6J ±  kb
    transcript NM_028763 RefSeq | MGI Sequence Detail 5449 C57BL/6  
    polypeptide Q9DBY5 UniProt | EBI | MGI Sequence Detail 414 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 18
      Genomic 1
      cDNA 17

      Microarray probesets 5
    References
    more
    • Summaries
      All 60
      Developmental Gene Expression 4
      Diseases 1
      Gene Ontology 6
      Phenotypes 31
    • Earliest
      J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/17/2024
    MGI 6.24     		The Jackson Laboratory