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Xkr4 Gene Detail
Summary
  • Symbol
    Xkr4
  • Name
    X-linked Kx blood group related 4
  • Feature Type
    protein coding gene
  • IDs
    MGI:3528744
    NCBI Gene: 497097
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:3276124-3741721 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 1.60 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    12285 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3528744
 protein coding gene Chr1:3269956-3741733 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015807
 protein coding gene Chr1:208291-667597 (-)
A/J MGP_AJ_G0015787
 protein coding gene Chr1:274603-769264 (-)
AKR/J MGP_AKRJ_G0015747
 protein coding gene Chr1:206567-680493 (-)
BALB/cJ MGP_BALBcJ_G0015744
 protein coding gene Chr1:227240-701935 (-)
C3H/HeJ MGP_C3HHeJ_G0015578
 protein coding gene Chr1:248981-726432 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016197
 protein coding gene Chr1:236101-739323 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013919
 protein coding gene Chr1:139962-574709 (-)
CAST/EiJ MGP_CASTEiJ_G0015158
 protein coding gene Chr1:407273-879041 (-)
CBA/J MGP_CBAJ_G0015551
 protein coding gene Chr1:277825-769113 (-)
DBA/2J MGP_DBA2J_G0015650
 protein coding gene Chr1:228052-697459 (-)
FVB/NJ MGP_FVBNJ_G0015654
 protein coding gene Chr1:225200-681084 (-)
LP/J MGP_LPJ_G0015724
 protein coding gene Chr1:375837-855221 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015674
 protein coding gene Chr1:337010-864357 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016244
 protein coding gene Chr1:207466-688649 (-)
PWK/PhJ MGP_PWKPhJ_G0014942
 protein coding gene Chr1:193997-647263 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014722
 protein coding gene Chr1:392711-854306 (-)
WSB/EiJ MGP_WSBEiJ_G0015221
 protein coding gene Chr1:241587-702912 (-)



Homology
more
  • Human Ortholog
    XKR4, XK related 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    XKR4, XK related 4
  • Synonyms
    hXKR4, XRG4
  • Links
    NCBI Gene ID: 114786
    neXtProt AC: NX_Q5GH76
    UniProt: Q5GH76

  • Chr Location
    8q12.1; chr8:55102028-55542054 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000051951 Ensembl Gene Model | MGI Sequence Detail 465598 C57BL/6J ±  kb
    transcript ENSMUST00000070533 Ensembl | MGI Sequence Detail 3634 Not Applicable  
    polypeptide ENSMUSP00000070648 Ensembl | MGI Sequence Detail 647 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 2
      cDNA 2

      Microarray probesets 1
    References
    more
    • Summaries
      All 23
      Gene Ontology 4
      Phenotypes 5
    • Earliest
      J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory