Ak3l2-ps Pseudogene Detail

Summary

• Symbol
  Ak3l2-ps
• Name
  adenylate kinase 3-like 2, pseudogene
• Synonyms
  Ak3l2

• Feature Type
  pseudogene
• IDs
  MGI:3574349
  NCBI Gene: 635960
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:72464280-72464951 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 43.35 cM

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3574349	pseudogene	Chr2:72464192-72465844 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012792	pseudogene	Chr4:101724627-101775598 (+)
A/J	MGP_AJ_G0012777	pseudogene	Chr4:98166950-98212380 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0012758	pseudogene	Chr4:98368979-98430818 (+)
C3H/HeJ	MGP_C3HHeJ_G0012615	pseudogene	Chr4:101335816-101386333 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0011370	pseudogene	Chr4:93432460-93483321 (+)
CAST/EiJ	MGP_CASTEiJ_G0012369	pseudogene	Chr4:99124964-99173003 (+)
CBA/J	MGP_CBAJ_G0012591	pseudogene	Chr4:108886084-108939212 (+)
DBA/2J	MGP_DBA2J_G0012654	pseudogene	Chr4:97862197-97910140 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012667	pseudogene	Chr4:114433031-114484477 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013097	pseudogene	Chr4:100792402-100839150 (+)
PWK/PhJ	MGP_PWKPhJ_G0012193	pseudogene	Chr4:96030794-96077847 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012002	pseudogene	Chr4:98243096-98292477 (+)
WSB/EiJ	MGP_WSBEiJ_G0012396	pseudogene	Chr4:100957960-101008999 (+)

Homology

• Gene Tree
  Ak3l2-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Targeted
  5
• Genomic Mutations
  6 involving Ak3l2-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000081957 (Evidence)
• NCBI Gene
  635960

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081957	Ensembl Gene Model | MGI Sequence Detail	672	C57BL/6J
transcript	ENSMUST00000120282	Ensembl | MGI Sequence Detail	672	Not Applicable

Other
Accession IDs

MGI:3652046

References

• Summaries
  All 19

  Phenotypes 13
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729

TSS for Ak3l2-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr524	Chr2:72464187-72464191 (+)	-91 bp
Tssr525	Chr2:72464387-72464404 (+)	116 bp