Usp17le-ps Pseudogene Detail

Summary

• Symbol
  Usp17le-ps
• Name
  ubiquitin specific peptidase 17-like E, pseudogene
• Synonyms
  Usp17, Usp17-3

• Feature Type
  pseudogene
• IDs
  MGI:3582591
  NCBI Gene: 667882
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:104301459-104302415 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 55.69 cM

Strain
Comparison

• SNPs within 2kb
  228 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3582591	pseudogene	Chr7:104296456-104302415 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040647	pseudogene	Chr7:107785472-107786425 (+)
A/J	MGP_AJ_G0040646	pseudogene	Chr7:104968485-104969438 (+)
AKR/J	MGP_AKRJ_G0040566	pseudogene	Chr7:106327007-107639091 (+)
BALB/cJ	MGP_BALBcJ_G0040637	pseudogene	Chr7:104678164-104679117 (+)
C3H/HeJ	MGP_C3HHeJ_G0040276	pseudogene	Chr7:107850821-107851774 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0041332	pseudogene	Chr7:112047264-112048220 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037479	pseudogene	Chr7:107047337-107048282 (+)
CAST/EiJ	MGP_CASTEiJ_G0039319	pseudogene	Chr7:99613264-99614608 (+)
CBA/J	MGP_CBAJ_G0040242	pseudogene	Chr7:115802170-115803123 (+)
DBA/2J	MGP_DBA2J_G0040455	pseudogene	Chr7:103288567-103289520 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0040492	pseudogene	Chr7:109133523-109134476 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0041385	pseudogene	Chr7:106808120-106809076 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Usp17le-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Usp17le-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000082084 (Evidence)
• NCBI Gene
  667882

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082084	Ensembl Gene Model | MGI Sequence Detail	957	C57BL/6J
transcript	ENSMUST00000117954	Ensembl | MGI Sequence Detail	957	Not Applicable

References

• Summaries
  All 20

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:159897 Burrows JF, et al., The DUB/USP17 deubiquitinating enzymes: A gene family within a tandemly repeated sequence, is also embedded within the copy number variable Beta-defensin cluster. BMC Genomics. 2010 Apr 19;11(1):250