Nlrp1c-ps Pseudogene Detail

Summary

• Symbol
  Nlrp1c-ps
• Name
  NLR family, pyrin domain containing 1C, pseudogene
• Synonyms
  Nalp1c, OTTMUSG00000006090

• Feature Type
  pseudogene
• IDs
  MGI:3582962
  NCBI Gene: 627984
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:71133256-71172045 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 43.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1201 from dbSNP Build 142
• Strain Annotations
  4

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3582962	pseudogene	Chr11:71133256-71176058 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0039790	pseudogene	Chr11:69096709-69140576 (-)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040327	pseudogene	Chr11:73992409-74035303 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038770	pseudogene	Chr11:71163097-71205253 (-)

Homology

• Gene Tree
  Nlrp1c-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Nlrp1c-ps
• Find Mice (IMSR)
  19 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1
• CCDS
  CCDS36211.1

• Ensembl
  ENSMUSG00000092528 (Evidence)
• NCBI Gene
  627984

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092528	Ensembl Gene Model | MGI Sequence Detail	38790	C57BL/6J
transcript	ENSMUST00000174668	Ensembl | MGI Sequence Detail	3422	Not Applicable

Other
Accession IDs

MGI:3649707

References

• Summaries
  All 21

  Phenotypes 12
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:336980 Cohen H, et al., Post-phagocytosis activation of NLRP3 inflammasome by two novel T6SS effectors. Elife. 2022 Sep 26;11:e82766