BC052688 Pseudogene Detail

Summary

• Symbol
  BC052688
• Name
  cDNA sequence BC052688

• Feature Type
  pseudogene
• IDs
  MGI:3583898
  NCBI Gene: 432812
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:61919394-61935096 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 32.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  338 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3583898	pseudogene	Chr13:61919394-61935096 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving BC052688
• Find Mice (IMSR)
  5 strains or lines available

Expression

• cDNA Data
  7

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  1

• NCBI Gene
  432812

Representative Sequences			Length	Strain/Species
genomic	432812	NCBI Gene Model | MGI Sequence Detail	15703	C57BL/6J
transcript	NR_028430	RefSeq | MGI Sequence Detail	1642	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582