A730017L22Rik Gene Detail

Summary

• Symbol
  A730017L22Rik
• Name
  RIKEN cDNA A730017L22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3584452
  NCBI Gene: 613258
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:130714979-130748316 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 63.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1060 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3584452	lncRNA gene	Chr2:130714461-130748316 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015472	unclassified non-coding RNA gene	Chr2:134364173-134398557 (-)
A/J	MGP_AJ_G0015448	unclassified non-coding RNA gene	Chr2:128920517-128953606 (-)
AKR/J	MGP_AKRJ_G0015412	unclassified non-coding RNA gene	Chr2:132648142-132674096 (-)
BALB/cJ	MGP_BALBcJ_G0015411	unclassified non-coding RNA gene	Chr2:129292313-129324301 (-)
C3H/HeJ	MGP_C3HHeJ_G0015234	unclassified non-coding RNA gene	Chr2:133081319-133111454 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015865	unclassified non-coding RNA gene	Chr2:138513696-138544826 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013603	unclassified non-coding RNA gene	Chr2:123666498-123693932 (-)
CAST/EiJ	MGP_CASTEiJ_G0014786	unclassified non-coding RNA gene	Chr2:133354864-133381527 (-)
CBA/J	MGP_CBAJ_G0015215	unclassified non-coding RNA gene	Chr2:143664189-143697044 (-)
DBA/2J	MGP_DBA2J_G0015309	unclassified non-coding RNA gene	Chr2:128305781-128338837 (-)
FVB/NJ	MGP_FVBNJ_G0015316	unclassified non-coding RNA gene	Chr2:126940814-126974092 (-)
LP/J	MGP_LPJ_G0015387	unclassified non-coding RNA gene	Chr2:134611057-134640049 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015340	unclassified non-coding RNA gene	Chr2:147479394-147514791 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015905	unclassified non-coding RNA gene	Chr2:132607226-132633590 (-)
PWK/PhJ	MGP_PWKPhJ_G0014574	unclassified non-coding RNA gene	Chr2:127877684-127904963 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014362	unclassified non-coding RNA gene	Chr2:131755221-131783763 (-)
WSB/EiJ	MGP_WSBEiJ_G0014893	unclassified non-coding RNA gene	Chr2:133531187-133558048 (-)

Homology

• Gene Tree
  A730017L22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving A730017L22Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085566 (Evidence)
• NCBI Gene
  613258

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085566	Ensembl Gene Model | MGI Sequence Detail	33338	C57BL/6J
transcript	ENSMUST00000128176	Ensembl | MGI Sequence Detail	3055	Not Applicable
polypeptide	Q3TM02	UniProt | EBI | MGI Sequence Detail	83	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:331893 Yang J, et al., Identifying key m(6)A-methylated lncRNAs and genes associated with neural tube defects via integrative MeRIP and RNA sequencing analyses. Front Genet. 2022;13:974357

TSS for A730017L22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26322	Chr2:130748258-130748313 (-)	30 bp
Tssr26321	Chr2:130748239-130748253 (-)	70 bp
Tssr26320	Chr2:130748205-130748214 (-)	106 bp