D330025C20Rik Gene Detail

Summary

• Symbol
  D330025C20Rik
• Name
  RIKEN cDNA D330025C20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3588219
  NCBI Gene: 665054
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:80405996-80409041 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588219	lncRNA gene	Chr18:80405996-80409042 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000966	unclassified gene	Chr18:81288763-81291808 (+)
A/J	MGP_AJ_G0000942	unclassified gene	Chr18:77723005-77726050 (+)
AKR/J	MGP_AKRJ_G0000929	unclassified gene	Chr18:80054395-80057452 (+)
BALB/cJ	MGP_BALBcJ_G0000935	unclassified gene	Chr18:77906047-77909092 (+)
C3H/HeJ	MGP_C3HHeJ_G0000918	unclassified gene	Chr18:80135878-80138923 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001051	unclassified gene	Chr18:83369965-83373010 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000782	unclassified gene	Chr18:76581726-76584773 (+)
CAST/EiJ	MGP_CASTEiJ_G0000910	unclassified gene	Chr18:80467588-80470654 (+)
CBA/J	MGP_CBAJ_G0000910	unclassified gene	Chr18:86414101-86417146 (+)
DBA/2J	MGP_DBA2J_G0000914	unclassified gene	Chr18:77269864-77272909 (+)
FVB/NJ	MGP_FVBNJ_G0000926	unclassified gene	Chr18:76590103-76593148 (+)
LP/J	MGP_LPJ_G0000969	unclassified gene	Chr18:81150895-81153940 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000916	unclassified gene	Chr18:87660453-87663498 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001043	unclassified gene	Chr18:80193824-80196881 (+)
PWK/PhJ	MGP_PWKPhJ_G0000865	unclassified gene	Chr18:77673223-77676356 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000838	unclassified gene	Chr18:80375403-80378479 (+)
WSB/EiJ	MGP_WSBEiJ_G0000918	unclassified gene	Chr18:80144135-80147180 (+)

Homology

• Gene Tree
  D330025C20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving D330025C20Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102260 (Evidence)
• NCBI Gene
  665054

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102260	Ensembl Gene Model | MGI Sequence Detail	3046	C57BL/6J
transcript	NR_168057	RefSeq | MGI Sequence Detail	3047	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for D330025C20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152106	Chr18:80405992-80405997 (+)	-1 bp