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Ccdc160 Gene Detail
Summary
  • Symbol
    Ccdc160
  • Name
    coiled-coil domain containing 160
  • Synonyms
    6330534C20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3588225
    NCBI Gene: 434778
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:51880077-51888345 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 29.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    197 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3588225
 protein coding gene ChrX:51880045-51888351 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035717
 protein coding gene ChrX:48011947-48020206 (+)
A/J MGP_AJ_G0035700
 protein coding gene ChrX:47869267-47877540 (+)
AKR/J MGP_AKRJ_G0035620
 protein coding gene ChrX:49174307-49182735 (+)
BALB/cJ MGP_BALBcJ_G0035686
 protein coding gene ChrX:47397542-47405821 (+)
C3H/HeJ MGP_C3HHeJ_G0035390
 protein coding gene ChrX:48269205-48277479 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036216
 protein coding gene ChrX:49156177-49164447 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033067
 protein coding gene ChrX:45326367-45334685 (+)
CAST/EiJ MGP_CASTEiJ_G0034681
 protein coding gene ChrX:35707508-35715779 (+)
CBA/J MGP_CBAJ_G0035364
 protein coding gene ChrX:50508744-50517015 (+)
DBA/2J MGP_DBA2J_G0035519
 protein coding gene ChrX:47650029-47658296 (+)
FVB/NJ MGP_FVBNJ_G0035467
 protein coding gene ChrX:47362316-47370580 (+)
LP/J MGP_LPJ_G0035606
 protein coding gene ChrX:48336895-48345163 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035506
 protein coding gene ChrX:52045799-52054059 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036233
 protein coding gene ChrX:47890444-47899808 (+)
PWK/PhJ MGP_PWKPhJ_G0034380
 protein coding gene ChrX:35200219-35209500 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034225
 protein coding gene ChrX:36514740-36524844 (+)
WSB/EiJ MGP_WSBEiJ_G0034825
 protein coding gene ChrX:47453200-47461473 (+)



Homology
more
  • Human Ortholog
    CCDC160, coiled-coil domain containing 160
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC160, coiled-coil domain containing 160
  • Links
    NCBI Gene ID: 347475
    neXtProt AC: NX_A6NGH7
    UniProt: A6NGH7

  • Chr Location
    Xq26.2; chrX:134237047-134246842 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    17 images
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Male chimeras hemizygous for a gene trapped allele exhibit abnormal rostral-caudal axis patterning, failure of chorioallantoic fusion, incomplete cephalic closure, kinked and open neural tubes, delayed heart looping and, in some cases, a distended pericardium.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000073207 Ensembl Gene Model | MGI Sequence Detail 8269 C57BL/6J ±  kb
    transcript ENSMUST00000101588 Ensembl | MGI Sequence Detail 1536 Not Applicable  
    polypeptide ENSMUSP00000099121 Ensembl | MGI Sequence Detail 323 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 7

      Microarray probesets 2
    References
    more
    • Summaries
      All 29
      Phenotypes 13
    • Earliest
      J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory