6030469F06Rik MGI Mouse Gene Detail - MGI:3588235

Sequence Map

Chr12:31218861-31235921 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588235	lncRNA gene	Chr12:31192759-31251084 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019657	protein coding gene	Chr12:29113697-29114251 (+)
A/J	MGP_AJ_G0019624	protein coding gene	Chr12:28299074-28299628 (+)
AKR/J	MGP_AKRJ_G0019595	protein coding gene	Chr12:29212443-29212997 (+)
BALB/cJ	MGP_BALBcJ_G0019601	protein coding gene	Chr12:28524919-28525473 (+)
C3H/HeJ	MGP_C3HHeJ_G0019405	protein coding gene	Chr12:29068938-29069492 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020048	protein coding gene	Chr12:30016946-30017500 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017673	protein coding gene	Chr12:27597800-27598354 (+)
CAST/EiJ	MGP_CASTEiJ_G0018960	protein coding gene	Chr12:24064066-24064620 (+)
CBA/J	MGP_CBAJ_G0019376	protein coding gene	Chr12:30987651-30988205 (+)
DBA/2J	MGP_DBA2J_G0019490	protein coding gene	Chr12:28132514-28133068 (+)
FVB/NJ	MGP_FVBNJ_G0019481	protein coding gene	Chr12:27926639-27927193 (+)
LP/J	MGP_LPJ_G0019560	protein coding gene	Chr12:29209303-29209857 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019516	protein coding gene	Chr12:30641003-30641557 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020088	protein coding gene	Chr12:28720814-28721368 (+)
PWK/PhJ	MGP_PWKPhJ_G0018727	protein coding gene	Chr12:22855684-22856238 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0018515	protein coding gene	Chr12:23329025-23329579 (+)
WSB/EiJ	MGP_WSBEiJ_G0019010	protein coding gene	Chr12:28963025-28963579 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	100043065	NCBI Gene Model \| MGI Sequence Detail	17061	C57BL/6J	± kb
transcript	NR_102715	RefSeq \| MGI Sequence Detail	1558	C57BL/6
polypeptide	Q3UYS9	UniProt \| EBI \| MGI Sequence Detail	184	Not Applicable

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Summaries

All 9
Earliest

J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 6030469F06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113104	Chr12:31218844-31218869 (+)	-4 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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