4732471J01Rik Gene Detail

Summary

• Symbol
  4732471J01Rik
• Name
  RIKEN cDNA 4732471J01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3603586
  NCBI Gene: 654804
• Alliance
  gene page
• Transcription Start Sites
  15 TSS

Location &
Maps

• Sequence Map
  Chr7:25076244-25265842 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 13.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4304 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3603586	lncRNA gene	Chr7:25076244-25274499 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004422	antisense lncRNA gene	Chr7:23843991-24058073 (+)
A/J	MGP_AJ_G0004400	antisense lncRNA gene	Chr7:23224419-23287862 (+)
AKR/J	MGP_AKRJ_G0004382	antisense lncRNA gene	Chr7:23772445-23841318 (+)
BALB/cJ	MGP_BALBcJ_G0004386	antisense lncRNA gene	Chr7:23438131-23502399 (+)
C3H/HeJ	MGP_C3HHeJ_G0004335	antisense lncRNA gene	Chr7:24204071-24271742 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004535	antisense lncRNA gene	Chr7:24642542-24861454 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003992	antisense lncRNA gene	Chr7:24646806-24783121 (+)
CAST/EiJ	MGP_CASTEiJ_G0004295	antisense lncRNA gene	Chr7:17691510-17868053 (+)
CBA/J	MGP_CBAJ_G0004329	antisense lncRNA gene	Chr7:25556007-25631516 (+)
DBA/2J	MGP_DBA2J_G0004344	antisense lncRNA gene	Chr7:23126632-23194336 (+)
FVB/NJ	MGP_FVBNJ_G0004361	antisense lncRNA gene	Chr7:23128907-23194044 (+)
LP/J	MGP_LPJ_G0004424	antisense lncRNA gene	Chr7:24142381-24212228 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004352	antisense lncRNA gene	Chr7:25257106-25464979 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004534	antisense lncRNA gene	Chr7:23478152-23687032 (+)
PWK/PhJ	MGP_PWKPhJ_G0004248	antisense lncRNA gene	Chr7:18074292-18272529 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004189	antisense lncRNA gene	Chr7:14797926-14863516 (+)
WSB/EiJ	MGP_WSBEiJ_G0004334	antisense lncRNA gene	Chr7:23662495-23884661 (+)

Homology

• Gene Tree
  4732471J01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000053714 (Evidence)
• NCBI Gene
  654804

Representative Sequences			Length	Strain/Species
genomic	654804	NCBI Gene Model | MGI Sequence Detail	189599	C57BL/6J
transcript	NR_015569	RefSeq | MGI Sequence Detail	2588	C57BL/6
polypeptide	Q8C5J9	UniProt | EBI | MGI Sequence Detail	145	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for 4732471J01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65123	Chr7:25091695-25091704 (+)	15,456 bp
Tssr65124	Chr7:25093712-25093732 (+)	17,478 bp
Tssr65125	Chr7:25095602-25095618 (+)	19,366 bp
Tssr65126	Chr7:25095871-25095910 (+)	19,647 bp
Tssr2148	Chr7:25126834-25126845 (+)	50,596 bp
Tssr65127	Chr7:25131154-25131159 (+)	54,913 bp
Tssr65128	Chr7:25133102-25133113 (+)	56,864 bp
Tssr65129	Chr7:25151514-25151543 (+)	75,285 bp
Tssr65130	Chr7:25162872-25162895 (+)	86,640 bp
Tssr65131	Chr7:25163077-25163091 (+)	86,840 bp
Tssr65132	Chr7:25163101-25163123 (+)	86,868 bp
Tssr65133	Chr7:25171303-25171316 (+)	95,066 bp
Tssr65134	Chr7:25171405-25171412 (+)	95,165 bp
Tssr65135	Chr7:25174172-25174198 (+)	97,941 bp
Tssr65136	Chr7:25175810-25175827 (+)	99,575 bp