D330041H03Rik Gene Detail

Summary

• Symbol
  D330041H03Rik
• Name
  RIKEN cDNA D330041H03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3603827
  NCBI Gene: 654822
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:24628455-24633487 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3603827	lncRNA gene	Chr17:24623623-24633516 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015341	unclassified non-coding RNA gene	Chr17:23385413-23395538 (-)
A/J	MGP_AJ_G0015316	unclassified non-coding RNA gene	Chr17:22758126-22768196 (-)
AKR/J	MGP_AKRJ_G0015279	unclassified non-coding RNA gene	Chr17:22832633-22842576 (-)
BALB/cJ	MGP_BALBcJ_G0015279	unclassified non-coding RNA gene	Chr17:22939406-22949364 (-)
C3H/HeJ	MGP_C3HHeJ_G0015103	unclassified non-coding RNA gene	Chr17:23176617-23192665 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015733	unclassified non-coding RNA gene	Chr17:24414434-24424331 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013474	unclassified non-coding RNA gene	Chr17:20222500-20234173 (-)
CAST/EiJ	MGP_CASTEiJ_G0014654	unclassified non-coding RNA gene	Chr17:23017286-23027906 (-)
CBA/J	MGP_CBAJ_G0015082	unclassified non-coding RNA gene	Chr17:25255925-25268761 (-)
DBA/2J	MGP_DBA2J_G0015177	unclassified non-coding RNA gene	Chr17:22338320-22349458 (-)
FVB/NJ	MGP_FVBNJ_G0015184	unclassified non-coding RNA gene	Chr17:22059743-22070285 (-)
LP/J	MGP_LPJ_G0015257	unclassified non-coding RNA gene	Chr17:23692929-23703067 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015210	unclassified non-coding RNA gene	Chr17:24975486-24985982 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015773	unclassified non-coding RNA gene	Chr17:23109670-23120855 (-)
PWK/PhJ	MGP_PWKPhJ_G0014444	unclassified non-coding RNA gene	Chr17:21103070-21105638 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014231	unclassified non-coding RNA gene	Chr17:21137505-21147379 (-)
WSB/EiJ	MGP_WSBEiJ_G0014761	unclassified non-coding RNA gene	Chr17:23173490-23184846 (-)

Homology

• Gene Tree
  D330041H03Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  12

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000073437 (Evidence)
• NCBI Gene
  654822

Representative Sequences			Length	Strain/Species
genomic	654822	NCBI Gene Model | MGI Sequence Detail	5033	C57BL/6J
transcript	NR_033554	RefSeq | MGI Sequence Detail	1484	C57BL/6
polypeptide	Q3V3M9	UniProt | EBI | MGI Sequence Detail	94	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 1

References

• Summaries
  All 11
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for D330041H03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146729	Chr17:24634498-24634508 (-)	-1,016 bp
Tssr146728	Chr17:24633444-24633458 (-)	36 bp
Tssr146727	Chr17:24633371-24633425 (-)	89 bp