5830418P13Rik Gene Detail

Summary

• Symbol
  5830418P13Rik
• Name
  RIKEN cDNA 5830418P13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3604110
  NCBI Gene: 100529079
• Alliance
  gene page
• Transcription Start Sites
  15 TSS

Location &
Maps

• Sequence Map
  Chr9:103300777-103338459 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 55.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1425 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3604110	lncRNA gene	Chr9:103300777-103338459 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015758	unclassified non-coding RNA gene	Chr9:105050308-105086842 (+)
A/J	MGP_AJ_G0015735	unclassified non-coding RNA gene	Chr9:101264243-101302407 (+)
AKR/J	MGP_AKRJ_G0015698	unclassified non-coding RNA gene	Chr9:103777248-103818585 (+)
BALB/cJ	MGP_BALBcJ_G0015696	unclassified non-coding RNA gene	Chr9:100973413-101013748 (+)
C3H/HeJ	MGP_C3HHeJ_G0015517	unclassified non-coding RNA gene	Chr9:104166088-104204998 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016151	unclassified non-coding RNA gene	Chr9:107966383-108009680 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013876	unclassified non-coding RNA gene	Chr9:98844907-98885483 (+)
CAST/EiJ	MGP_CASTEiJ_G0015072	unclassified non-coding RNA gene	Chr9:104017504-104058487 (+)
CBA/J	MGP_CBAJ_G0015497	unclassified non-coding RNA gene	Chr9:111732219-111767786 (+)
DBA/2J	MGP_DBA2J_G0015596	unclassified non-coding RNA gene	Chr9:100754645-100793408 (+)
FVB/NJ	MGP_FVBNJ_G0015601	unclassified non-coding RNA gene	Chr9:99563213-99595893 (+)
LP/J	MGP_LPJ_G0015676	unclassified non-coding RNA gene	Chr9:105254863-105295291 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015624	unclassified non-coding RNA gene	Chr9:113523160-113563498 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016194	unclassified non-coding RNA gene	Chr9:104019378-104056985 (+)
PWK/PhJ	MGP_PWKPhJ_G0014855	unclassified non-coding RNA gene	Chr9:101015528-101055156 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014642	unclassified non-coding RNA gene	Chr9:104067535-104108715 (+)
WSB/EiJ	MGP_WSBEiJ_G0015176	unclassified non-coding RNA gene	Chr9:103904839-103944186 (+)

Homology

• Gene Tree
  5830418P13Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000086236 (Evidence)
• NCBI Gene
  100529079

Representative Sequences			Length	Strain/Species
genomic	100529079	NCBI Gene Model | MGI Sequence Detail	37683	C57BL/6J
transcript	NR_040466	RefSeq | MGI Sequence Detail	2178	ZRU/MplStud

Molecular
Reagents

• All nucleic 9

  cDNA 9

References

• Summaries
  All 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 5830418P13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86787	Chr9:103300243-103300246 (+)	-532 bp
Tssr86788	Chr9:103300271-103300284 (+)	-499 bp
Tssr86789	Chr9:103300318-103300330 (+)	-453 bp
Tssr86790	Chr9:103300345-103300348 (+)	-430 bp
Tssr86791	Chr9:103300765-103300778 (+)	-5 bp
Tssr86792	Chr9:103302263-103302266 (+)	1,488 bp
Tssr86793	Chr9:103302323-103302372 (+)	1,571 bp
Tssr86794	Chr9:103303742-103303757 (+)	2,973 bp
Tssr86795	Chr9:103303784-103303805 (+)	3,018 bp
Tssr86796	Chr9:103303820-103303830 (+)	3,048 bp
Tssr86797	Chr9:103303836-103303846 (+)	3,064 bp
Tssr86798	Chr9:103303871-103303874 (+)	3,096 bp
Tssr86799	Chr9:103304685-103304700 (+)	3,916 bp
Tssr86800	Chr9:103319715-103319743 (+)	18,952 bp
Tssr86801	Chr9:103334791-103334806 (+)	34,022 bp