B130024G19Rik Gene Detail

Summary

• Symbol
  B130024G19Rik
• Name
  RIKEN cDNA B130024G19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3604353
  NCBI Gene: 434198
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr7:70015131-70060894 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 38.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1088 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3604353	lncRNA gene	Chr7:70014658-70139720 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015674	unclassified non-coding RNA gene	Chr7:71795523-71845155 (+)
A/J	MGP_AJ_G0015653	unclassified non-coding RNA gene	Chr7:70251090-70297033 (+)
AKR/J	MGP_AKRJ_G0015616	unclassified non-coding RNA gene	Chr7:71723025-71770100 (+)
BALB/cJ	MGP_BALBcJ_G0015614	unclassified non-coding RNA gene	Chr7:69985405-70032695 (+)
C3H/HeJ	MGP_C3HHeJ_G0015436	unclassified non-coding RNA gene	Chr7:72441994-72487857 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016068	unclassified non-coding RNA gene	Chr7:74771782-74821226 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013798	unclassified non-coding RNA gene	Chr7:72990332-73036263 (+)
CAST/EiJ	MGP_CASTEiJ_G0014991	unclassified non-coding RNA gene	Chr7:63210298-63259861 (+)
CBA/J	MGP_CBAJ_G0015417	unclassified non-coding RNA gene	Chr7:77153299-77208345 (+)
DBA/2J	MGP_DBA2J_G0015512	unclassified non-coding RNA gene	Chr7:68926547-68974893 (+)
FVB/NJ	MGP_FVBNJ_G0015519	unclassified non-coding RNA gene	Chr7:69029944-69076076 (+)
LP/J	MGP_LPJ_G0015592	unclassified non-coding RNA gene	Chr7:72972942-73024267 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015541	unclassified non-coding RNA gene	Chr7:77409337-77461143 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016110	unclassified non-coding RNA gene	Chr7:71136340-71184650 (+)
PWK/PhJ	MGP_PWKPhJ_G0014773	unclassified non-coding RNA gene	Chr7:62026923-62073728 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014562	unclassified non-coding RNA gene	Chr7:58142317-58190140 (+)
WSB/EiJ	MGP_WSBEiJ_G0015096	unclassified non-coding RNA gene	Chr7:71483164-71534227 (+)

Homology

• Gene Tree
  B130024G19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  1 involving B130024G19Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000100005 (Evidence)
• NCBI Gene
  434198

Representative Sequences			Length	Strain/Species
genomic	434198	NCBI Gene Model | MGI Sequence Detail	45764	C57BL/6J
transcript	NR_045850	RefSeq | MGI Sequence Detail	1820	C57BL/6
polypeptide	Q8BRD6	UniProt | EBI | MGI Sequence Detail	102	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 2

References

• Summaries
  All 18

  Phenotypes 5
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for B130024G19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67167	Chr7:70014829-70014850 (+)	-291 bp
Tssr67168	Chr7:70015008-70015011 (+)	-121 bp
Tssr67169	Chr7:70015097-70015109 (+)	-28 bp
Tssr67170	Chr7:70015123-70015147 (+)	4 bp
Tssr67171	Chr7:70031495-70031500 (+)	16,367 bp