D930015M05Rik Gene Detail

Summary

• Symbol
  D930015M05Rik
• Name
  RIKEN cDNA D930015M05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3612068
  NCBI Gene: 320507
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:92239237-92262653 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 51.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  673 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3612068	lncRNA gene	Chr2:92239237-92262653 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015444	unclassified non-coding RNA gene	Chr2:93839529-93862931 (+)
A/J	MGP_AJ_G0015420	unclassified non-coding RNA gene	Chr2:90042641-90066037 (+)
AKR/J	MGP_AKRJ_G0015384	unclassified non-coding RNA gene	Chr2:92534270-92557657 (+)
BALB/cJ	MGP_BALBcJ_G0015383	unclassified non-coding RNA gene	Chr2:90227960-90251356 (+)
C3H/HeJ	MGP_C3HHeJ_G0015206	unclassified non-coding RNA gene	Chr2:92837718-92861117 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015837	unclassified non-coding RNA gene	Chr2:97055214-97078616 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013576	unclassified non-coding RNA gene	Chr2:86534753-86559750 (+)
CAST/EiJ	MGP_CASTEiJ_G0014758	unclassified non-coding RNA gene	Chr2:93385357-93409288 (+)
CBA/J	MGP_CBAJ_G0015187	unclassified non-coding RNA gene	Chr2:100441017-100464423 (+)
DBA/2J	MGP_DBA2J_G0015281	unclassified non-coding RNA gene	Chr2:89635796-89659188 (+)
FVB/NJ	MGP_FVBNJ_G0015288	unclassified non-coding RNA gene	Chr2:88747658-88771372 (+)
LP/J	MGP_LPJ_G0015359	unclassified non-coding RNA gene	Chr2:94036653-94060055 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015312	unclassified non-coding RNA gene	Chr2:103402814-103426226 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015877	unclassified non-coding RNA gene	Chr2:92617137-92644087 (+)
PWK/PhJ	MGP_PWKPhJ_G0014546	unclassified non-coding RNA gene	Chr2:89381630-89405647 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014334	unclassified non-coding RNA gene	Chr2:92188042-92213365 (+)
WSB/EiJ	MGP_WSBEiJ_G0014865	unclassified non-coding RNA gene	Chr2:93238119-93261513 (+)

Homology

• Gene Tree
  D930015M05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving D930015M05Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000084781 (Evidence)
• NCBI Gene
  320507

Representative Sequences			Length	Strain/Species
genomic	320507	NCBI Gene Model | MGI Sequence Detail	23417	C57BL/6J
transcript	NR_040621	RefSeq | MGI Sequence Detail	1190	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 14

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for D930015M05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18947	Chr2:92253204-92253238 (+)	13,984 bp