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Ly6g6f Gene Detail
Summary
  • Symbol
    Ly6g6f
  • Name
    lymphocyte antigen 6 family member G6F
  • Feature Type
    protein coding gene
  • IDs
    MGI:3616082
    NCBI Gene: 433099
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:35299514-35304571 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 18.59 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3616082
 protein coding gene Chr17:35299456-35304586 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023615
 protein coding gene Chr17:35221786-35226914 (-)
A/J MGP_AJ_G0023575
 protein coding gene Chr17:34054181-34059116 (-)
AKR/J MGP_AKRJ_G0023543
 protein coding gene Chr17:34528757-34534025 (-)
BALB/cJ MGP_BALBcJ_G0023581
 protein coding gene Chr17:34190933-34196329 (-)
C3H/HeJ MGP_C3HHeJ_G0023342
 protein coding gene Chr17:34921602-34927751 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024020
 protein coding gene Chr17:36559108-36565119 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021501
 protein coding gene Chr17:31821958-31826989 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0023320
 protein coding gene Chr17:38064272-38069537 (-)
DBA/2J MGP_DBA2J_G0023448
 protein coding gene Chr17:33375071-33380095 (-)
FVB/NJ MGP_FVBNJ_G0023415
 protein coding gene Chr17:33212480-33217970 (-)
LP/J MGP_LPJ_G0023525
 protein coding gene Chr17:35545965-35552608 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023437
 protein coding gene Chr17:37002710-37007723 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024065
 protein coding gene Chr17:34747959-34753044 (-)
PWK/PhJ MGP_PWKPhJ_G0022586
 protein coding gene Chr17:32208068-32213590 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022406
 protein coding gene Chr17:32758356-32763618 (-)
WSB/EiJ MGP_WSBEiJ_G0022902
 protein coding gene Chr17:34867014-34871984 (-)



Homology
more
  • Human Ortholog
    LY6G6F, lymphocyte antigen 6 family member G6F
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LY6G6F, lymphocyte antigen 6 family member G6F
  • Synonyms
    C6orf21, G6f, LY6G6, LY6G6D, NG32
  • Links
    NCBI Gene ID: 259215
    neXtProt AC: NX_Q5SQ64
    UniProt: Q5SQ64

  • Chr Location
    6p21.33; chr6:31706866-31710679 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 433099 NCBI Gene Model | MGI Sequence Detail 5058 C57BL/6J ±  kb
    transcript NM_001163192 RefSeq | MGI Sequence Detail 1068 Not Specified  
    polypeptide NP_001156664 RefSeq | MGI Sequence Detail 300 Not Specified  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • InterPro Domains
      IPR007110 Immunoglobulin-like domain
      IPR036179 Immunoglobulin-like domain superfamily
      IPR013783 Immunoglobulin-like fold
      IPR003599 Immunoglobulin subtype
      IPR013106 Immunoglobulin V-set domain
      IPR026524 Lymphocyte antigen 6 complex locus protein G6d/G6f
    Molecular
    Reagents
    less
    • All nucleic 3
      cDNA 3

      Microarray probesets 1
    References
    more
    • Summaries
      All 21
      Phenotypes 9
    • Earliest
      J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory