Mir688 Gene Detail

Summary

• Symbol
  Mir688
• Name
  microRNA 688
• Synonyms
  mir 688, Mirn688, mmu-mir-688

• Feature Type
  miRNA gene
• IDs
  MGI:3629926
  NCBI Gene: 751542
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:102580227-102580301 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 57.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3629926	miRNA gene	Chr15:102580227-102580301 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0008232	miRNA gene	Chr15:104880151-104880225 (-)
A/J	MGP_AJ_G0008222	miRNA gene	Chr15:100744512-100744586 (-)
AKR/J	MGP_AKRJ_G0008205	miRNA gene	Chr15:103804187-103804261 (-)
BALB/cJ	MGP_BALBcJ_G0008207	miRNA gene	Chr15:100790325-100790399 (-)
C3H/HeJ	MGP_C3HHeJ_G0008149	miRNA gene	Chr15:103870405-103870479 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0008399	miRNA gene	Chr15:108769719-108769793 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007467	miRNA gene	Chr15:96515085-96515155 (-)
CAST/EiJ	MGP_CASTEiJ_G0008018	miRNA gene	Chr15:104736060-104736134 (-)
CBA/J	MGP_CBAJ_G0008118	miRNA gene	Chr15:112588215-112588289 (-)
DBA/2J	MGP_DBA2J_G0008151	miRNA gene	Chr15:100019153-100019227 (-)
FVB/NJ	MGP_FVBNJ_G0008175	miRNA gene	Chr15:99080438-99080512 (-)
LP/J	MGP_LPJ_G0008232	miRNA gene	Chr15:105016577-105016651 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008138	miRNA gene	Chr15:116131807-116131881 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008391	miRNA gene	Chr15:103839156-103839230 (-)
PWK/PhJ	MGP_PWKPhJ_G0007940	miRNA gene	Chr15:100188059-100188133 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007831	miRNA gene	Chr15:103672125-103672199 (-)
WSB/EiJ	MGP_WSBEiJ_G0008096	miRNA gene	Chr15:104457127-104457201 (-)

Homology

• Gene Tree
  Mir688
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  23 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Radiation induced
  2
• Targeted
  3
• Genomic Mutations
  3 involving Mir688
• Find Mice (IMSR)
  3 strains or lines available

Mice homozygous for a targeted deletion are viable with no observed pathologies.

Expression

• Assay Results
  709
• Tissues
  3
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000076009 (Evidence)
• NCBI Gene
  751542

Representative Sequences			Length	Strain/Species
genomic	751542	NCBI Gene Model | MGI Sequence Detail	75	C57BL/6J
transcript	NR_030460	RefSeq | MGI Sequence Detail	75	C57BL/6

Molecular
Reagents

• All nucleic 1

  Other 1

Other Database
Links

miRBase

MI0004653

References

• Summaries
  All 29

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 23
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Mir688:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr136713	Chr15:102580251-102580275 (-)	38 bp