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C130021I20Rik Gene Detail
Summary
  • Symbol
    C130021I20Rik
  • Name
    Riken cDNA C130021I20 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3639863
    NCBI Gene: 100504399
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:33531205-33535675 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 22.50 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    106 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3639863
 lncRNA gene Chr2:33531205-33536366 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003549
 antisense lncRNA gene Chr2:32174396-32179557 (+)
A/J MGP_AJ_G0003529
 antisense lncRNA gene Chr2:30812717-30817885 (+)
AKR/J MGP_AKRJ_G0003508
 antisense lncRNA gene Chr2:31912984-31918147 (+)
BALB/cJ MGP_BALBcJ_G0003518
 antisense lncRNA gene Chr2:30928493-30933654 (+)
C3H/HeJ MGP_C3HHeJ_G0003466
 antisense lncRNA gene Chr2:31789654-31794815 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003656
 antisense lncRNA gene Chr2:33130042-33135203 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003166
 antisense lncRNA gene Chr2:29542567-29547734 (+)
CAST/EiJ MGP_CASTEiJ_G0003429
 antisense lncRNA gene Chr2:31772420-31777583 (+)
CBA/J MGP_CBAJ_G0003463
 antisense lncRNA gene Chr2:34416128-34421289 (+)
DBA/2J MGP_DBA2J_G0003471
 antisense lncRNA gene Chr2:30590594-30595759 (+)
FVB/NJ MGP_FVBNJ_G0003490
 antisense lncRNA gene Chr2:30476367-30481530 (+)
LP/J MGP_LPJ_G0003544
 antisense lncRNA gene Chr2:32085587-32090748 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003478
 antisense lncRNA gene Chr2:33970620-33975785 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003659
 antisense lncRNA gene Chr2:31794970-31800133 (+)
PWK/PhJ MGP_PWKPhJ_G0003384
 antisense lncRNA gene Chr2:30497932-30503088 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003329
 antisense lncRNA gene Chr2:31968461-31973576 (+)
WSB/EiJ MGP_WSBEiJ_G0003464
 antisense lncRNA gene Chr2:31972840-31978004 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    772
  • Tissues
    8
  • cDNA Data
    23
  • Literature Summary
    5
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 100504399 NCBI Gene Model | MGI Sequence Detail 4471 C57BL/6J ±  kb
transcript NR_046275 RefSeq | MGI Sequence Detail 3815 C57BL/6  
polypeptide Q3UGR3 UniProt | EBI | MGI Sequence Detail 154 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 3
References
more
  • Summaries
    All 18
    Developmental Gene Expression 5
  • Earliest
    J:109564 Li MZ, et al., Molecular mapping of developing dorsal horn-enriched genes by microarray and dorsal/ventral subtractive screening. Dev Biol. 2006 Apr 15;292(2):555-64
  • Latest
    J:206496 Hoekstra EJ, et al., Lmx1a encodes a rostral set of mesodiencephalic dopaminergic neurons marked by the Wnt/B-catenin signaling activator R-spondin 2. PLoS One. 2013;8(9):e74049
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory