Gm10830 Gene Detail

Summary

• Symbol
  Gm10830
• Name
  predicted gene 10830

• Feature Type
  lncRNA gene
• IDs
  MGI:3641625
  NCBI Gene: 100038520
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:103010630-103015984 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 58.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641625	lncRNA gene	Chr15:103010630-103015984 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003318	antisense lncRNA gene	Chr15:105340835-105343647 (+)
A/J	MGP_AJ_G0003294	antisense lncRNA gene	Chr15:101183687-101186521 (+)
AKR/J	MGP_AKRJ_G0003277	antisense lncRNA gene	Chr15:104252135-104254940 (+)
BALB/cJ	MGP_BALBcJ_G0003283	antisense lncRNA gene	Chr15:101229531-101232363 (+)
C3H/HeJ	MGP_C3HHeJ_G0003236	antisense lncRNA gene	Chr15:104338521-104341349 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003425	antisense lncRNA gene	Chr15:109236328-109239158 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002946	antisense lncRNA gene	Chr15:96950938-96953732 (+)
CAST/EiJ	MGP_CASTEiJ_G0003201	antisense lncRNA gene	Chr15:105211219-105214325 (+)
CBA/J	MGP_CBAJ_G0003233	antisense lncRNA gene	Chr15:113075794-113078622 (+)
DBA/2J	MGP_DBA2J_G0003238	antisense lncRNA gene	Chr15:100453368-100456202 (+)
FVB/NJ	MGP_FVBNJ_G0003257	antisense lncRNA gene	Chr15:99520757-99523583 (+)
LP/J	MGP_LPJ_G0003311	antisense lncRNA gene	Chr15:105478900-105481712 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003246	antisense lncRNA gene	Chr15:116588465-116591580 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003427	antisense lncRNA gene	Chr15:104293837-104296671 (+)
PWK/PhJ	MGP_PWKPhJ_G0003160	antisense lncRNA gene	Chr15:100634588-100637394 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003106	antisense lncRNA gene	Chr15:104134240-104137029 (+)
WSB/EiJ	MGP_WSBEiJ_G0003236	antisense lncRNA gene	Chr15:104910373-104913238 (+)

Homology

• Gene Tree
  Gm10830
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000099758 (Evidence)
• NCBI Gene
  100038520

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099758	Ensembl Gene Model | MGI Sequence Detail	5355	C57BL/6J
transcript	ENSMUST00000242902	Ensembl | MGI Sequence Detail	1731	Not Applicable
polypeptide	Q3URL5	UniProt | EBI | MGI Sequence Detail	115	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10830:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133513	Chr15:103010642-103010655 (+)	19 bp