Gm10300 Gene Detail

Summary

• Symbol
  Gm10300
• Name
  predicted gene 10300

• Feature Type
  lncRNA gene
• IDs
  MGI:3641670
  NCBI Gene: 100379259
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:131802008-131804303 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 64.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641670	lncRNA gene	Chr4:131802008-131804303 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0028862	protein coding gene	Chr4:134195679-134197974 (+)
A/J	MGP_AJ_G0028821	protein coding gene	Chr4:128622056-128624351 (+)
AKR/J	MGP_AKRJ_G0028774	protein coding gene	Chr4:132226579-132228874 (+)
BALB/cJ	MGP_BALBcJ_G0028844	protein coding gene	Chr4:129235256-129237551 (+)
C3H/HeJ	MGP_C3HHeJ_G0028558	protein coding gene	Chr4:132477427-132479722 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0029286	protein coding gene	Chr4:139013818-139016113 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026558	protein coding gene	Chr4:121713953-121716224 (+)
CAST/EiJ	MGP_CASTEiJ_G0027991	protein coding gene	Chr4:130544204-130546481 (+)
CBA/J	MGP_CBAJ_G0028524	protein coding gene	Chr4:142570705-142573000 (+)
DBA/2J	MGP_DBA2J_G0028673	protein coding gene	Chr4:129044751-129047046 (+)
FVB/NJ	MGP_FVBNJ_G0028640	protein coding gene	Chr4:127897824-127900119 (+)
LP/J	MGP_LPJ_G0028774	protein coding gene	Chr4:134355955-134358250 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028666	protein coding gene	Chr4:147202664-147204959 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0029324	protein coding gene	Chr4:132620914-132623209 (+)
PWK/PhJ	MGP_PWKPhJ_G0027712	protein coding gene	Chr4:125716739-125719034 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0027538	protein coding gene	Chr4:128500094-128502362 (+)
WSB/EiJ	MGP_WSBEiJ_G0028071	protein coding gene	Chr4:132805051-132807346 (+)

Homology

• Gene Tree
  Gm10300
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm10300
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000070717 (Evidence)
• NCBI Gene
  100379259

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000070717	Ensembl Gene Model | MGI Sequence Detail	2296	C57BL/6J
transcript	ENSMUST00000094662	Ensembl | MGI Sequence Detail	2296	Not Applicable
polypeptide	Q8C8P7	UniProt | EBI | MGI Sequence Detail	189	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Gm10300:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39361	Chr4:131802915-131802920 (+)	910 bp