Gm9885 Gene Detail

Summary

• Symbol
  Gm9885
• Name
  predicted gene 9885

• Feature Type
  lncRNA gene
• IDs
  MGI:3641726
  NCBI Gene: 791275
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:78228348-78230786 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 44.64 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641726	lncRNA gene	Chr7:78228305-78230786 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004465	antisense lncRNA gene	Chr7:80388434-80390642 (+)
A/J	MGP_AJ_G0004445	antisense lncRNA gene	Chr7:78567582-78569790 (+)
AKR/J	MGP_AKRJ_G0004428	antisense lncRNA gene	Chr7:80252943-80255151 (+)
BALB/cJ	MGP_BALBcJ_G0004430	antisense lncRNA gene	Chr7:78265232-78267440 (+)
C3H/HeJ	MGP_C3HHeJ_G0004379	antisense lncRNA gene	Chr7:80909212-80911420 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004581	antisense lncRNA gene	Chr7:83562423-83564631 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004035	antisense lncRNA gene	Chr7:81139194-81141398 (+)
CAST/EiJ	MGP_CASTEiJ_G0004339	antisense lncRNA gene	Chr7:71761577-71763791 (+)
CBA/J	MGP_CBAJ_G0004374	antisense lncRNA gene	Chr7:86314951-86317159 (+)
DBA/2J	MGP_DBA2J_G0004388	antisense lncRNA gene	Chr7:77161451-77163659 (+)
FVB/NJ	MGP_FVBNJ_G0004405	antisense lncRNA gene	Chr7:77060864-77063072 (+)
LP/J	MGP_LPJ_G0004469	antisense lncRNA gene	Chr7:81646932-81649140 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004395	antisense lncRNA gene	Chr7:86607692-86609900 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004579	antisense lncRNA gene	Chr7:79693019-79695227 (+)
PWK/PhJ	MGP_PWKPhJ_G0004292	antisense lncRNA gene	Chr7:70303659-70305867 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004233	antisense lncRNA gene	Chr7:66674915-66677125 (+)
WSB/EiJ	MGP_WSBEiJ_G0004378	antisense lncRNA gene	Chr7:80016985-80019193 (+)

Homology

• Gene Tree
  Gm9885
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm9885
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000052629 (Evidence)
• NCBI Gene
  791275

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052629	Ensembl Gene Model | MGI Sequence Detail	2439	C57BL/6J
transcript	ENSMUST00000186234	Ensembl | MGI Sequence Detail	2439	Not Applicable
polypeptide	Q91VZ9	UniProt | EBI | MGI Sequence Detail	37	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 21

  Phenotypes 11
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:201479 Srivastava U, et al., Differences in health status affect susceptibility and mapping of genetic loci for atherosclerosis (fatty streak) in inbred mice. Arterioscler Thromb Vasc Biol. 2012 Oct;32(10):2380-6

TSS for Gm9885:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67299	Chr7:78228305-78228334 (+)	-28 bp