Gm10044 Pseudogene Detail

Summary

• Symbol
  Gm10044
• Name
  predicted gene 10044

• Feature Type
  pseudogene
• IDs
  MGI:3641749
  NCBI Gene: 218695
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:14678121-14683836 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 4.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  209 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641749	pseudogene	Chr14:14677999-14723324 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015265	unclassified non-coding RNA gene	Chr14:48610-108668 (-)
A/J	MGP_AJ_G0015239	unclassified non-coding RNA gene	Chr14:39469-87985 (-)
AKR/J	MGP_AKRJ_G0015202	unclassified non-coding RNA gene	Chr14:39591-88973 (-)
BALB/cJ	MGP_BALBcJ_G0015201	unclassified non-coding RNA gene	Chr14:37582-84638 (-)
C3H/HeJ	MGP_C3HHeJ_G0015025	unclassified non-coding RNA gene	Chr14:45228-95799 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015658	unclassified non-coding RNA gene	Chr14:45286-112631 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013400	unclassified non-coding RNA gene	Chr14:982998-1030828 (-)
CAST/EiJ	MGP_CASTEiJ_G0014578	unclassified non-coding RNA gene	Chr14:38985-90676 (-)
CBA/J	MGP_CBAJ_G0015004	unclassified non-coding RNA gene	Chr14:42126-95168 (-)
DBA/2J	MGP_DBA2J_G0015097	unclassified non-coding RNA gene	Chr14:30704-83597 (-)
FVB/NJ	MGP_FVBNJ_G0015108	unclassified non-coding RNA gene	Chr14:29511-82025 (-)
LP/J	MGP_LPJ_G0015178	unclassified non-coding RNA gene	Chr14:34898-89438 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015135	unclassified non-coding RNA gene	Chr14:52498-106623 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015697	unclassified non-coding RNA gene	Chr14:35070-93776 (-)
PWK/PhJ	MGP_PWKPhJ_G0014370	unclassified non-coding RNA gene	Chr14:53324-104983 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014157	unclassified non-coding RNA gene	Chr14:41588-96172 (-)
WSB/EiJ	MGP_WSBEiJ_G0014681	unclassified non-coding RNA gene	Chr14:40238-90118 (-)

Homology

• Gene Tree
  Gm10044
  

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000072723 (Evidence)
• NCBI Gene
  218695

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072723	Ensembl Gene Model | MGI Sequence Detail	5716	C57BL/6J
transcript	ENSMUST00000238229	Ensembl | MGI Sequence Detail	711	Not Applicable
polypeptide	Q8BY84	UniProt | EBI | MGI Sequence Detail	157	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR002110 Ankyrin repeat
  IPR036770 Ankyrin repeat-containing domain superfamily
  IPR050657 Ankyrin repeat domain-containing protein

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 3

References

• Summaries
  All 12
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm10044:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127381	Chr14:14677995-14678005 (+)	-121 bp