Gm10530 Gene Detail

Summary

• Symbol
  Gm10530
• Name
  predicted gene 10530

• Feature Type
  lncRNA gene
• IDs
  MGI:3641765
  NCBI Gene: 100038672
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:159442319-159512446 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 69.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641765	lncRNA gene	Chr1:159442319-159512446 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015119	unclassified non-coding RNA gene	Chr1:164773236-164847551 (+)
A/J	MGP_AJ_G0015093	unclassified non-coding RNA gene	Chr1:158087373-158163605 (+)
AKR/J	MGP_AKRJ_G0015056	unclassified non-coding RNA gene	Chr1:162917841-162989321 (+)
BALB/cJ	MGP_BALBcJ_G0015056	unclassified non-coding RNA gene	Chr1:158644091-158717484 (+)
C3H/HeJ	MGP_C3HHeJ_G0014879	unclassified non-coding RNA gene	Chr1:163090408-163162659 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015512	unclassified non-coding RNA gene	Chr1:170384230-170458799 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013258	unclassified non-coding RNA gene	Chr1:150251255-150321011 (+)
CAST/EiJ	MGP_CASTEiJ_G0014433	unclassified non-coding RNA gene	Chr1:162707302-162785496 (+)
CBA/J	MGP_CBAJ_G0014858	unclassified non-coding RNA gene	Chr1:176422187-176503411 (+)
DBA/2J	MGP_DBA2J_G0014951	unclassified non-coding RNA gene	Chr1:157070760-157141065 (+)
FVB/NJ	MGP_FVBNJ_G0014962	unclassified non-coding RNA gene	Chr1:155482885-155553652 (+)
LP/J	MGP_LPJ_G0015033	unclassified non-coding RNA gene	Chr1:165886006-165960214 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014989	unclassified non-coding RNA gene	Chr1:183944571-184022324 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015551	unclassified non-coding RNA gene	Chr1:162748369-162819394 (+)
PWK/PhJ	MGP_PWKPhJ_G0014225	unclassified non-coding RNA gene	Chr1:156203551-156275196 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014013	unclassified non-coding RNA gene	Chr1:161579488-161656483 (+)
WSB/EiJ	MGP_WSBEiJ_G0014536	unclassified non-coding RNA gene	Chr1:162911496-162985737 (+)

Homology

• Gene Tree
  Gm10530
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm10530
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000073528 (Evidence)
• NCBI Gene
  100038672

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073528	Ensembl Gene Model | MGI Sequence Detail	70128	C57BL/6J
transcript	ENSMUST00000097514	Ensembl | MGI Sequence Detail	1169	Not Applicable
polypeptide	Q3TYK6	UniProt | EBI | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;