Mir223hg Gene Detail

Summary

• Symbol
  Mir223hg
• Name
  Mir223 host gene
• Synonyms
  ENSMUSG00000065522, F630028O10Rik, Gm14924, lnc15847

• Feature Type
  lncRNA gene
• IDs
  MGI:3641813
  NCBI Gene: 100038363
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:95283532-95287248 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 42.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641813	lncRNA gene	ChrX:95283498-95287267 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004739	antisense lncRNA gene	ChrX:92622878-92626588 (+)
A/J	MGP_AJ_G0004717	antisense lncRNA gene	ChrX:92782382-92786092 (+)
AKR/J	MGP_AKRJ_G0004700	antisense lncRNA gene	ChrX:95278406-95282116 (+)
BALB/cJ	MGP_BALBcJ_G0004701	antisense lncRNA gene	ChrX:91531159-91534869 (+)
C3H/HeJ	MGP_C3HHeJ_G0004649	antisense lncRNA gene	ChrX:93109381-93113091 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004851	antisense lncRNA gene	ChrX:95544912-95548622 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004288	antisense lncRNA gene	ChrX:90781153-90784981 (+)
CAST/EiJ	MGP_CASTEiJ_G0004606	antisense lncRNA gene	ChrX:77614041-77617768 (+)
CBA/J	MGP_CBAJ_G0004644	antisense lncRNA gene	ChrX:98451392-98455102 (+)
DBA/2J	MGP_DBA2J_G0004659	antisense lncRNA gene	ChrX:91982735-91986445 (+)
FVB/NJ	MGP_FVBNJ_G0004677	antisense lncRNA gene	ChrX:91390444-91394154 (+)
LP/J	MGP_LPJ_G0004741	antisense lncRNA gene	ChrX:93626249-93629959 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004663	antisense lncRNA gene	ChrX:102710183-102713893 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004851	antisense lncRNA gene	ChrX:92354248-92357958 (+)
PWK/PhJ	MGP_PWKPhJ_G0004558	antisense lncRNA gene	ChrX:75262521-75266231 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004492	antisense lncRNA gene	ChrX:78444134-78448087 (+)
WSB/EiJ	MGP_WSBEiJ_G0004649	antisense lncRNA gene	ChrX:91187757-91191467 (+)

Homology

• Gene Tree
  Mir223hg
  

Expression

• Assay Results
  715
• Tissues
  8
• cDNA Data
  11
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000078122 (Evidence)
• NCBI Gene
  100038363

Representative Sequences			Length	Strain/Species
genomic	100038363	NCBI Gene Model | MGI Sequence Detail	3717	C57BL/6J
transcript	NR_030718	RefSeq | MGI Sequence Detail	2796	C57BL/6
polypeptide	Q3TDG6	UniProt | EBI | MGI Sequence Detail	72	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 12

  cDNA 11

  Primer pair 1

Other
Accession IDs

MGI:3801789, MGI:7571250

References

• Summaries
  All 14

  Developmental Gene Expression 1
• Earliest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398
• Latest
  J:306687 Xu S, et al., TLR4 promotes microglial pyroptosis via lncRNA-F630028O10Rik by activating PI3K/AKT pathway after spinal cord injury. Cell Death Dis. 2020 Aug 10;11(8):693

TSS for Mir223hg:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161561	ChrX:95283541-95283554 (+)	16 bp
Tssr161562	ChrX:95284095-95284097 (+)	564 bp