A630072L19Rik Gene Detail

Summary

• Symbol
  A630072L19Rik
• Name
  RIKEN cDNA A630072L19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3641830
  NCBI Gene: 100038467
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:100905378-100910479 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 51.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  258 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641830	lncRNA gene	Chr12:100905378-100916134 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005389	lincRNA gene	Chr12:102433383-102441515 (+)
A/J	MGP_AJ_G0005372	lincRNA gene	Chr12:98574810-98582943 (+)
AKR/J	MGP_AKRJ_G0005352	lincRNA gene	Chr12:101267735-101275867 (+)
BALB/cJ	MGP_BALBcJ_G0005354	lincRNA gene	Chr12:98928283-98936415 (+)
C3H/HeJ	MGP_C3HHeJ_G0005303	lincRNA gene	Chr12:101801015-101809166 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005508	lincRNA gene	Chr12:105603154-105611287 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004893	lincRNA gene	Chr12:95557257-95565563 (+)
CAST/EiJ	MGP_CASTEiJ_G0005247	lincRNA gene	Chr12:96913102-96921446 (+)
CBA/J	MGP_CBAJ_G0005292	lincRNA gene	Chr12:109507376-109515508 (+)
DBA/2J	MGP_DBA2J_G0005309	lincRNA gene	Chr12:98027586-98035718 (+)
FVB/NJ	MGP_FVBNJ_G0005335	lincRNA gene	Chr12:96747018-96755132 (+)
LP/J	MGP_LPJ_G0005391	lincRNA gene	Chr12:102286322-102294454 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005317	lincRNA gene	Chr12:113089831-113097963 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005509	lincRNA gene	Chr12:100843910-100852042 (+)
PWK/PhJ	MGP_PWKPhJ_G0005196	lincRNA gene	Chr12:92669315-92677503 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005117	lincRNA gene	Chr12:95026876-95035077 (+)
WSB/EiJ	MGP_WSBEiJ_G0005297	lincRNA gene	Chr12:101707736-101715925 (+)

Homology

• Gene Tree
  A630072L19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving A630072L19Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000097160 (Evidence)
• NCBI Gene
  100038467

Representative Sequences			Length	Strain/Species
genomic	100038467	NCBI Gene Model | MGI Sequence Detail	5102	C57BL/6J
transcript	AK153749	GenBank | ENA | DDBJ | MGI Sequence Detail	3405	C57BL/6J
polypeptide	Q3U5B0	UniProt | EBI | MGI Sequence Detail	149	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;