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Trav11 Gene Detail
Summary
  • Symbol
    Trav11
  • Name
    T cell receptor alpha variable 11
  • Synonyms
    ENSMUSG00000072509, Gm10908
Location &
Maps
more
  • Sequence Map
    Chr14:53756760-53757316 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642163
 gene segment Chr14:53756760-53757316 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0002518
 gene segment Chr14:45994911-45995463 (+)
AKR/J MGP_AKRJ_G0002516
 gene segment Chr14:48107517-48108069 (+)
BALB/cJ MGP_BALBcJ_G0002477
 gene segment Chr1:168183203-168183755 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002641
 gene segment Chr14:49778346-49778902 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002445
 gene segment Chr14:44121606-44122158 (+)
CBA/J MGP_CBAJ_G0002484
 gene segment Chr14:51249285-51249837 (+)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002509
 gene segment Chr14:45712464-45713016 (+)
LP/J MGP_LPJ_G0002553
 gene segment Chr14:48308394-48308946 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0002648
 gene segment Chr14:46959028-46959580 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002364
 gene segment Chr14:43117676-43118232 (+)
WSB/EiJ MGP_WSBEiJ_G0002488
 gene segment Chr14:47694943-47695233 (+)



Homology
more
  • Human Ortholog
    TRAV10, T cell receptor alpha variable 10
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV10, T cell receptor alpha variable 10
  • Synonyms
    TCRAV10S1, TCRAV24S1
  • Links
    NCBI Gene ID: 28676
    UniProt: A0A0B4J240

  • Chr Location
    14q11.2; chr14:21825472-21826075 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    18
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126466 NCBI Gene Model | MGI Sequence Detail 557 C57BL/6J ±  kb
polypeptide A0A0B4J1J9 UniProt | EBI | MGI Sequence Detail 114 Not Applicable  
For the selected sequence
Protein
Information
less
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:337059 Iwanami N, et al., Tnpo3 controls splicing of the pre-mRNA encoding the canonical TCR alpha chain of iNKT cells. Nat Commun. 2023 Jun 20;14(1):3645
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory