Gm10553 Gene Detail

Summary

• Symbol
  Gm10553
• Name
  predicted gene 10553

• Feature Type
  lncRNA gene
• IDs
  MGI:3642178
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:85077233-85078795 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642178	lncRNA gene	Chr1:85077233-85078795 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0016171	protein coding gene	Chr1:85371973-85372455 (+)
BALB/cJ	MGP_BALBcJ_G0016169	protein coding gene	Chr1:83230129-83233511 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0014344	protein coding gene	Chr1:78068935-78070215 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0016074	protein coding gene	Chr1:82369317-82369869 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0016099	protein coding gene	Chr1:95686770-95689849 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10553
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm10553
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9

• Ensembl
  ENSMUSG00000073631 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073631	Ensembl Gene Model | MGI Sequence Detail	1563	C57BL/6J
transcript	ENSMUST00000238757	Ensembl | MGI Sequence Detail	1563	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45