1700061E17Rik Gene Detail

Summary

• Symbol
  1700061E17Rik
• Name
  RIKEN cDNA 1700061E17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3642196
  NCBI Gene: 100038395
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:110815269-110816872 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 60.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642196	lncRNA gene	Chr9:110815269-110816872 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004701	antisense lncRNA gene	Chr9:113181363-113183037 (+)
A/J	MGP_AJ_G0004681	antisense lncRNA gene	Chr9:109052538-109053955 (+)
AKR/J	MGP_AKRJ_G0004664	antisense lncRNA gene	Chr9:111760955-111762372 (+)
BALB/cJ	MGP_BALBcJ_G0004665	antisense lncRNA gene	Chr9:108805544-108806810 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0004256	antisense lncRNA gene	Chr9:106265350-106267718 (+)
CAST/EiJ	MGP_CASTEiJ_G0004570	antisense lncRNA gene	Chr9:112075059-112076373 (+)
CBA/J	MGP_CBAJ_G0004608	antisense lncRNA gene	Chr9:120579945-120581188 (+)
DBA/2J	MGP_DBA2J_G0004623	antisense lncRNA gene	Chr9:108507468-108509223 (+)
FVB/NJ	MGP_FVBNJ_G0004641	antisense lncRNA gene	Chr9:107351275-107352535 (+)
LP/J	MGP_LPJ_G0004705	antisense lncRNA gene	Chr9:113470120-113471540 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004627	antisense lncRNA gene	Chr9:121896333-121900296 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004814	antisense lncRNA gene	Chr9:112117585-112120273 (+)
PWK/PhJ	MGP_PWKPhJ_G0004522	antisense lncRNA gene	Chr9:108753889-108755299 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004459	antisense lncRNA gene	Chr9:112203838-112205892 (+)
WSB/EiJ	MGP_WSBEiJ_G0004613	antisense lncRNA gene	Chr9:111984500-111985813 (+)

Homology

• Gene Tree
  1700061E17Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• UniProt
  1

• Ensembl
  ENSMUSG00000102060 (Evidence)
• NCBI Gene
  100038395

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102060	Ensembl Gene Model | MGI Sequence Detail	1604	C57BL/6J
transcript	ENSMUST00000185439	Ensembl | MGI Sequence Detail	1067	Not Applicable
polypeptide	Q3V2K3	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;