Gm10398 Gene Detail

Summary

• Symbol
  Gm10398
• Name
  predicted gene 10398

• Feature Type
  lncRNA gene
• IDs
  MGI:3642254
  NCBI Gene: 100038485
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:24909838-24913864 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 14.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642254	lncRNA gene	Chr14:24909838-24913864 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005525	lincRNA gene	Chr14:17814829-17818857 (+)
A/J	MGP_AJ_G0005511	lincRNA gene	Chr14:17380658-17384666 (+)
AKR/J	MGP_AKRJ_G0005490	lincRNA gene	Chr14:18005675-18009703 (+)
BALB/cJ	MGP_BALBcJ_G0005493	lincRNA gene	Chr14:17475822-17479828 (+)
C3H/HeJ	MGP_C3HHeJ_G0005440	lincRNA gene	Chr14:17924243-17929947 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005648	lincRNA gene	Chr14:18391225-18395251 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0005382	lincRNA gene	Chr14:17790496-17794521 (+)
CBA/J	MGP_CBAJ_G0005429	lincRNA gene	Chr14:19293838-19297844 (+)
DBA/2J	MGP_DBA2J_G0005445	lincRNA gene	Chr14:17188498-17192508 (+)
FVB/NJ	MGP_FVBNJ_G0005471	lincRNA gene	Chr14:17053130-17057136 (+)
LP/J	MGP_LPJ_G0005529	lincRNA gene	Chr14:18101995-18106011 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005455	lincRNA gene	Chr14:19013095-19017115 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005648	lincRNA gene	Chr14:17800733-17804759 (+)
PWK/PhJ	MGP_PWKPhJ_G0005333	lincRNA gene	Chr14:16795199-16799915 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005251	lincRNA gene	Chr14:17626749-17630762 (+)
WSB/EiJ	MGP_WSBEiJ_G0005432	lincRNA gene	Chr14:17795085-17799103 (+)

Homology

• Gene Tree
  Gm10398
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• UniProt
  1

• Ensembl
  ENSMUSG00000072686 (Evidence)
• NCBI Gene
  100038485

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072686	Ensembl Gene Model | MGI Sequence Detail	4027	C57BL/6J
transcript	ENSMUST00000100826	Ensembl | MGI Sequence Detail	397	Not Applicable
polypeptide	Q3V2L4	UniProt | EBI | MGI Sequence Detail	83	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;