Gm10092 Pseudogene Detail

Summary

• Symbol
  Gm10092
• Name
  predicted gene 10092

• Feature Type
  pseudogene
• IDs
  MGI:3642362
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:35956309-35958101 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 25.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642362	pseudogene	Chr16:35956309-35958101 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040106	pseudogene	Chr16:34508174-34509865 (+)
A/J	MGP_AJ_G0040102	pseudogene	Chr16:32830186-32831900 (+)
AKR/J	MGP_AKRJ_G0040029	pseudogene	Chr16:33988579-33990095 (+)
BALB/cJ	MGP_BALBcJ_G0040085	pseudogene	Chr16:32954697-32956342 (+)
C3H/HeJ	MGP_C3HHeJ_G0039738	pseudogene	Chr16:34109615-34111247 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040681	pseudogene	Chr16:35245563-35248966 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038827	pseudogene	Chr16:34338028-34340021 (+)
CBA/J	MGP_CBAJ_G0039705	pseudogene	Chr16:36700218-36704508 (+)
DBA/2J	MGP_DBA2J_G0039897	pseudogene	Chr16:32657653-32659579 (+)
FVB/NJ	MGP_FVBNJ_G0039858	pseudogene	Chr16:32649362-32651631 (+)
LP/J	MGP_LPJ_G0039945	pseudogene	Chr16:34234406-34237209 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039846	pseudogene	Chr16:35953346-35954954 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040771	pseudogene	Chr16:34044495-34051079 (+)
PWK/PhJ	MGP_PWKPhJ_G0038520	pseudogene	Chr16:33078224-33080403 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038237	pseudogene	Chr16:33849429-33851211 (+)
WSB/EiJ	MGP_WSBEiJ_G0039054	pseudogene	Chr16:33964265-33967479 (+)

Homology

• Gene Tree
  Gm10092
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm10092
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000060956 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060956	Ensembl Gene Model | MGI Sequence Detail	1793	C57BL/6J
transcript	ENSMUST00000077110	Ensembl | MGI Sequence Detail	180	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:154850 Bilodeau M, et al., A retroviral strategy that efficiently creates chromosomal deletions in mammalian cells. Nat Methods. 2007 Mar;4(3):263-8
• Latest
  J:154051 Bilodeau M, et al., Analysis of blood stem cell activity and cystatin gene expression in a mouse model presenting a chromosomal deletion encompassing Csta and Stfa2l1. PLoS One. 2009;4(10):e7500