Gm10250 Pseudogene Detail

Summary

• Symbol
  Gm10250
• Name
  predicted pseudogene 10250

• Feature Type
  pseudogene
• IDs
  MGI:3642408
  NCBI Gene: 100039281
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:5150136-5150617 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 1.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  199 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642408	pseudogene	Chr15:5150084-5150654 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015848	protein coding gene	Chr1:12521244-12521810 (+)
A/J	MGP_AJ_G0021652	protein coding gene	Chr15:2036284-2036854 (-)
AKR/J	MGP_AKRJ_G0021630	protein coding gene	Chr15:2005556-2006126 (-)
BALB/cJ	MGP_BALBcJ_G0021659	protein coding gene	Chr15:1960433-1961003 (-)
C3H/HeJ	MGP_C3HHeJ_G0021435	protein coding gene	Chr15:2032629-2033199 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0022098	protein coding gene	Chr15:2110731-2120893 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029021	protein coding gene	Chr6:138282436-138283025 (+)
CAST/EiJ	MGP_CASTEiJ_G0015200	protein coding gene	Chr1:12497119-12497687 (+)
CBA/J	MGP_CBAJ_G0021404	protein coding gene	Chr15:2147666-2151063 (-)
DBA/2J	MGP_DBA2J_G0021528	protein coding gene	Chr15:1969326-1969914 (-)
FVB/NJ	MGP_FVBNJ_G0021506	protein coding gene	Chr15:1907526-1908096 (-)
LP/J	MGP_LPJ_G0021596	protein coding gene	Chr15:1957895-1958465 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029090	protein coding gene	Chr5:6287419-6287879 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022121	protein coding gene	Chr15:2010224-2011463 (-)
PWK/PhJ	MGP_PWKPhJ_G0014984	protein coding gene	Chr1:11812102-11812671 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014765	protein coding gene	Chr1:12508072-12508637 (+)
WSB/EiJ	MGP_WSBEiJ_G0021007	protein coding gene	Chr15:1951591-1954401 (-)

Homology

• Gene Tree
  Gm10250
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000068706 (Evidence)
• NCBI Gene
  100039281

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000068706	Ensembl Gene Model | MGI Sequence Detail	482	C57BL/6J
transcript	ENSMUST00000090488	Ensembl | MGI Sequence Detail	482	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10250:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133616	Chr15:5150656-5150676 (-)	-49 bp