Rps12-ps24 Pseudogene Detail

Summary

• Symbol
  Rps12-ps24
• Name
  ribosomal protein S12, pseudogene 24
• Synonyms
  Gm10063, Rps12l2, Rps12-ps24

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3642518
  NCBI Gene: 671641
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:36492907-36493287 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 22.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642518	pseudogene	Chr8:36492827-36493302 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014065	pseudogene	Chr8:34669415-34669793 (+)
A/J	MGP_AJ_G0014083	pseudogene	Chr8:33303008-33303403 (+)
AKR/J	MGP_AKRJ_G0014012	pseudogene	Chr8:34330135-34332534 (+)
BALB/cJ	MGP_BALBcJ_G0014036	pseudogene	Chr8:33408686-33409066 (+)
C3H/HeJ	MGP_C3HHeJ_G0013868	pseudogene	Chr8:34680994-34682572 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014474	pseudogene	Chr8:35964275-35967499 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010479	pseudogene	Chr11:75591994-75592389 (-)
CBA/J	MGP_CBAJ_G0013850	pseudogene	Chr8:37366790-37370299 (+)
DBA/2J	MGP_DBA2J_G0013928	pseudogene	Chr8:33225496-33226691 (+)
FVB/NJ	MGP_FVBNJ_G0013931	pseudogene	Chr8:32883918-32884298 (+)
LP/J	MGP_LPJ_G0014014	pseudogene	Chr8:34631142-34631505 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013956	pseudogene	Chr8:36802366-36803312 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014447	pseudogene	Chr8:34466184-34468472 (+)
PWK/PhJ	MGP_PWKPhJ_G0010372	pseudogene	Chr11:73286098-73286694 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010184	pseudogene	Chr11:74955466-74955861 (-)
WSB/EiJ	MGP_WSBEiJ_G0010535	pseudogene	Chr11:75201336-75201676 (-)

Homology

• Gene Tree
  Rps12-ps24
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000098181 (Evidence)
• NCBI Gene
  671641

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098181	Ensembl Gene Model | MGI Sequence Detail	381	C57BL/6J
transcript	ENSMUST00000182321	Ensembl | MGI Sequence Detail	381	Not Applicable
polypeptide	XP_036010305	RefSeq | MGI Sequence Detail	127	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rps12-ps24:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76908	Chr8:36492821-36492832 (+)	-80 bp