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Gm15417 Gene Detail
Summary
  • Symbol
    Gm15417
  • Name
    predicted gene 15417
  • Synonyms
    ENSMUSG00000074466
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3642531
    NCBI Gene: 545539
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:89299171-89306086 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 39.10 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    137 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642531
 lncRNA gene Chr3:89296640-89306097 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003778
 antisense lncRNA gene Chr3:89602481-89611407 (+)
A/J MGP_AJ_G0003758
 antisense lncRNA gene Chr3:86638150-86645844 (+)
AKR/J MGP_AKRJ_G0003735
 antisense lncRNA gene Chr3:88730000-88738503 (+)
BALB/cJ MGP_BALBcJ_G0003747
 antisense lncRNA gene Chr3:86605565-86612688 (+)
C3H/HeJ MGP_C3HHeJ_G0003693
 antisense lncRNA gene Chr3:88936508-88943413 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003889
 antisense lncRNA gene Chr3:92989557-92997651 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003392
 antisense lncRNA gene Chr3:82122280-82129030 (+)
CAST/EiJ MGP_CASTEiJ_G0003657
 antisense lncRNA gene Chr3:89292010-89299143 (+)
CBA/J MGP_CBAJ_G0003689
 antisense lncRNA gene Chr3:96176943-96183835 (+)
DBA/2J MGP_DBA2J_G0003699
 antisense lncRNA gene Chr3:86016384-86024192 (+)
FVB/NJ MGP_FVBNJ_G0003720
 antisense lncRNA gene Chr3:84359612-84366690 (+)
LP/J MGP_LPJ_G0003779
 antisense lncRNA gene Chr3:90683770-90691302 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003708
 antisense lncRNA gene Chr3:102386946-102395111 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003888
 antisense lncRNA gene Chr3:88487106-88497244 (+)
PWK/PhJ MGP_PWKPhJ_G0003614
 antisense lncRNA gene Chr3:85893776-85901281 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003556
 antisense lncRNA gene Chr3:87664746-87671775 (+)
WSB/EiJ MGP_WSBEiJ_G0003693
 antisense lncRNA gene Chr3:88879242-88886298 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    21
  • Chemically induced (other)
    1
  • Gene trapped
    19
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Gm15417
  • Find Mice (IMSR)
    6 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    11
Sequences &
Gene Models
less
  • All Sequences
    40
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 545539 NCBI Gene Model | MGI Sequence Detail 6916 C57BL/6J ±  kb
transcript NR_040403 RefSeq | MGI Sequence Detail 1464 C57BL/6  
polypeptide Q3UW30 UniProt | EBI | MGI Sequence Detail 111 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 3
References
more
  • Summaries
    All 18
    Diseases 1
    Phenotypes 7
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory