Gm9889 Gene Detail

Summary

• Symbol
  Gm9889
• Name
  predicted gene 9889

• Feature Type
  lncRNA gene
• IDs
  MGI:3642568
  NCBI Gene: 791369
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:115508787-115510377 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 50.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642568	lncRNA gene	Chr3:115508787-115510377 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006280	lincRNA gene	Chr3:117578287-117579863 (+)
A/J	MGP_AJ_G0006273	lincRNA gene	Chr3:113734539-113736117 (+)
AKR/J	MGP_AKRJ_G0006249	lincRNA gene	Chr3:116597590-116599168 (+)
BALB/cJ	MGP_BALBcJ_G0006247	lincRNA gene	Chr3:113586032-113587610 (+)
C3H/HeJ	MGP_C3HHeJ_G0006199	lincRNA gene	Chr3:116973404-116974982 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006412	lincRNA gene	Chr3:121906608-121908186 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005708	lincRNA gene	Chr3:109447886-109449437 (+)
CAST/EiJ	MGP_CASTEiJ_G0006132	lincRNA gene	Chr3:116239224-116240805 (+)
CBA/J	MGP_CBAJ_G0006182	lincRNA gene	Chr3:126062578-126064156 (+)
DBA/2J	MGP_DBA2J_G0006204	lincRNA gene	Chr3:112977331-112978909 (+)
FVB/NJ	MGP_FVBNJ_G0006225	lincRNA gene	Chr3:110623260-110624833 (+)
LP/J	MGP_LPJ_G0006285	lincRNA gene	Chr3:119118385-119119961 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006216	lincRNA gene	Chr3:133442396-133443973 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006418	lincRNA gene	Chr3:116154903-116156481 (+)
PWK/PhJ	MGP_PWKPhJ_G0006071	lincRNA gene	Chr3:112608381-112610007 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005983	lincRNA gene	Chr3:114163874-114165470 (+)
WSB/EiJ	MGP_WSBEiJ_G0006180	lincRNA gene	Chr3:116832231-116833809 (+)

Homology

• Gene Tree
  Gm9889
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm9889
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000052769 (Evidence)
• NCBI Gene
  791369

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052769	Ensembl Gene Model | MGI Sequence Detail	1591	C57BL/6J
transcript	ENSMUST00000064809	Ensembl | MGI Sequence Detail	1591	Not Applicable
polypeptide	Q8BYT7	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm9889:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31332	Chr3:115508805-115508821 (+)	26 bp