Gm10362 Pseudogene Detail

Summary

• Symbol
  Gm10362
• Name
  predicted gene 10362

• Feature Type
  pseudogene
• IDs
  MGI:3642619
  NCBI Gene: 100040929
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:73300208-73300759 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 33.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642619	pseudogene	Chr15:73300172-73300773 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  RPL17-C18orf32, RPL17-C18orf32 readthrough

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  RPL17-C18orf32, RPL17-C18orf32 readthrough
  
• Synonyms
  PD-1, RPL17
• Links
  HGNC:44661

  NCBI Gene ID: 100526842

  
  
• Chr Location
  18q21.1; chr18:49481178-49492479 (-)  GRCh38

---

• MGI Vertebrate Homology
  Gm10362 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: RPL17-C18orf32
• Gene Tree
  Gm10362
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  3
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm10362
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000116174 (Evidence)
• NCBI Gene
  100040929

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116174	Ensembl Gene Model | MGI Sequence Detail	552	C57BL/6J
transcript	ENSMUST00000229262	Ensembl | MGI Sequence Detail	552	Not Applicable

References

• Summaries
  All 24

  Phenotypes 20
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27