Gm10268 Pseudogene Detail

Summary

• Symbol
  Gm10268
• Name
  predicted gene 10268

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3642637
  NCBI Gene: 118568354
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:38377881-38378435 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 20.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642637	pseudogene	Chr18:38377859-38378435 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011430	pseudogene	Chr18:35417600-35418153 (+)
AKR/J	MGP_AKRJ_G0011394	pseudogene	Chr18:36379766-36380319 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0011296	pseudogene	Chr18:36452948-36453501 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011272	pseudogene	Chr18:39111864-39112417 (+)
DBA/2J	MGP_DBA2J_G0011325	pseudogene	Chr18:35015764-35016317 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10268
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  2

• Ensembl
  ENSMUSG00000066475 (Evidence)
• NCBI Gene
  118568354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000066475	Ensembl Gene Model | MGI Sequence Detail	555	C57BL/6J
transcript	ENSMUST00000085340	Ensembl | MGI Sequence Detail	555	Not Applicable
polypeptide	XP_036017233	RefSeq | MGI Sequence Detail	184	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10268:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150778	Chr18:38377842-38377851 (+)	-34 bp