Gm9947 Gene Detail

Summary

• Symbol
  Gm9947
• Name
  predicted gene 9947

• Feature Type
  lncRNA gene
• IDs
  MGI:3642739
  NCBI Gene: 105243866
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:14823161-14847155 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 4.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  942 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642739	lncRNA gene	Chr1:14823161-14851198 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002644	antisense lncRNA gene	Chr1:12184053-12207927 (+)
A/J	MGP_AJ_G0002620	antisense lncRNA gene	Chr1:12071896-12096533 (+)
AKR/J	MGP_AKRJ_G0002600	antisense lncRNA gene	Chr1:12056790-12080726 (+)
BALB/cJ	MGP_BALBcJ_G0002606	antisense lncRNA gene	Chr1:11782136-11806045 (+)
C3H/HeJ	MGP_C3HHeJ_G0002566	antisense lncRNA gene	Chr1:12048335-12073707 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002750	antisense lncRNA gene	Chr1:12727104-12751900 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002298	antisense lncRNA gene	Chr1:10658165-10684353 (+)
CAST/EiJ	MGP_CASTEiJ_G0002540	antisense lncRNA gene	Chr1:12174888-12200787 (+)
CBA/J	MGP_CBAJ_G0002561	antisense lncRNA gene	Chr1:13024473-13048369 (+)
DBA/2J	MGP_DBA2J_G0002566	antisense lncRNA gene	Chr1:11699371-11723224 (+)
FVB/NJ	MGP_FVBNJ_G0002586	antisense lncRNA gene	Chr1:11492572-11519674 (+)
LP/J	MGP_LPJ_G0002646	antisense lncRNA gene	Chr1:12379083-12405065 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002577	antisense lncRNA gene	Chr1:13719586-13744430 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002755	antisense lncRNA gene	Chr1:11984472-12008967 (+)
PWK/PhJ	MGP_PWKPhJ_G0002497	antisense lncRNA gene	Chr1:11505506-11531269 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002450	antisense lncRNA gene	Chr1:12200912-12225405 (+)
WSB/EiJ	MGP_WSBEiJ_G0002569	antisense lncRNA gene	Chr1:11962119-11987093 (+)

Homology

• Gene Tree
  Gm9947
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000054493 (Evidence)
• NCBI Gene
  105243866

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054493	Ensembl Gene Model | MGI Sequence Detail	23995	C57BL/6J
transcript	ENSMUST00000067599	Ensembl | MGI Sequence Detail	2920	Not Applicable
polypeptide	Q8BPS9	UniProt | EBI | MGI Sequence Detail	163	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;