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Cldn25 Gene Detail
Summary
  • Symbol
    Cldn25
  • Name
    claudin 25
  • Synonyms
    Cldn21, Cldn21-ps, Cldn25, Cldn25-ps
Location &
Maps
more
  • Sequence Map
    Chr9:48958902-48959594 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 26.58 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    109 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642767
 protein coding gene Chr9:48958857-48959642 (-)
129S1/SvImJ MGP_129S1SvImJ_G0014142
 pseudogene Chr9:47860749-47861441 (-)
A/J MGP_AJ_G0014162
 pseudogene Chr9:46433866-46434558 (-)
AKR/J MGP_AKRJ_G0014085
 pseudogene Chr9:47403992-47404684 (-)
BALB/cJ MGP_BALBcJ_G0014111
 pseudogene Chr9:46155027-46155719 (-)
C3H/HeJ MGP_C3HHeJ_G0013941
 pseudogene Chr9:47856506-47857198 (-)
C57BL/6NJ MGP_C57BL6NJ_G0014555
 pseudogene Chr9:49218947-49219639 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0012394
 pseudogene Chr9:45920075-45920767 (-)
CAST/EiJ MGP_CASTEiJ_G0013599
 pseudogene Chr9:47804059-47804751 (-)
CBA/J MGP_CBAJ_G0013924
 pseudogene Chr9:50967802-50968494 (-)
DBA/2J MGP_DBA2J_G0014007
 pseudogene Chr9:46288619-46289311 (-)
FVB/NJ MGP_FVBNJ_G0014007
 pseudogene Chr9:45536880-45537572 (-)
LP/J MGP_LPJ_G0014090
 pseudogene Chr9:48229906-48230598 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0014036
 pseudogene Chr9:52650684-52651376 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0014528
 pseudogene Chr9:47344923-47345615 (-)
PWK/PhJ MGP_PWKPhJ_G0013418
 pseudogene Chr9:46255383-46256075 (-)
SPRET/EiJ MGP_SPRETEiJ_G0013202
 pseudogene Chr9:47657203-47657895 (-)
WSB/EiJ MGP_WSBEiJ_G0013660
 pseudogene Chr9:47377862-47378554 (-)



Homology
more
  • Human Ortholog
    CLDN25, claudin 25
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLDN25, claudin 25
  • Links
    NCBI Gene ID: 644672
    neXtProt AC: NX_C9JDP6
    UniProt: C9JDP6

  • Chr Location
    11q23.2; chr11:113779796-113780485 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    733
  • Tissues
    20
  • cDNA Data
    1
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000105298 Ensembl Gene Model | MGI Sequence Detail 693 C57BL/6J ±  kb
transcript ENSMUST00000197641 Ensembl | MGI Sequence Detail 693 Not Applicable  
polypeptide NP_001371194 RefSeq | MGI Sequence Detail 230 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 1
    Primer pair 1
    Other 1
Other
Accession IDs
less
MGI:6434312
References
more
  • Summaries
    All 9
    Developmental Gene Expression 1
    Gene Ontology 2
  • Earliest
    J:169091 Mineta K, et al., Predicted expansion of the claudin multigene family. FEBS Lett. 2011 Feb 18;585(4):606-12
  • Latest
    J:236202 Tanaka H, et al., Claudin-21 Has a Paracellular Channel Role at Tight Junctions. Mol Cell Biol. 2016 Jan 04;36(6):954-64
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory