Gm5301 Pseudogene Detail

Summary

• Symbol
  Gm5301
• Name
  predicted pseudogene 5301
• Synonyms
  Gm44942

• Feature Type
  pseudogene
• IDs
  MGI:3642953
  NCBI Gene: 384356
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:23165340-23167413 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 10.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  4

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642953	pseudogene	Chr6:23165172-23167421 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0013335	pseudogene	Chr6:20490377-20499778 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0013200	pseudogene	Chr6:20436895-20447377 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013731	pseudogene	Chr6:21325992-21327657 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5301
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  1

• Ensembl
  ENSMUSG00000107032 (Evidence)
• NCBI Gene
  384356

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107032	Ensembl Gene Model | MGI Sequence Detail	2074	C57BL/6J
transcript	ENSMUST00000096093	Ensembl | MGI Sequence Detail	2074	Not Applicable

Other
Accession IDs

MGI:5753518

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;